Job Description P09053 Confidence 99.64% Date Thu Jan 5 11:01:50 GMT 2012 Rank 233 Aligned Residues 307 % Identity 11% Template c2vycA_ PDB info PDB header:lyase Chain: A: PDB Molecule:biodegradative arginine decarboxylase; PDBTitle: crystal structure of acid induced arginine decarboxylase2 from e. coli Resolution 2.4 Å

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		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	L	A	G	M	L	R	E	K	L	G	W	D	I	E	P	Q	N	I	A	L	T	N	G	S	Q	S	A	F	F	Y	L	F	N	L	F	A	G	R	R	A	D	G	R	V	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	A	G	L	E	E	D	L	F	V	S	A	R	P	N	I	E	L	L
Query Conservation
Alig confidence																.	.	.																																	.	.	.	.	.	.																						.
Template Conservation																.	.	.																																	.	.	.	.	.	.																						.
Template Sequence		G	E	S	E	K	Y	A	A	R	V	F	G	A	D	.	.	.	R	S	W	S	V	V	V	G	T	S	G	S	N	R	T	I	M	Q	A	C	M	T	D	N	D	V	V	V	V	D	R	N	.	.	.	.	.	.	C	H	K	S	I	E	Q	G	L	M	L	T	G	A	K	P	V	Y	M	V	P	.	S	R	N
Template Known Secondary structure													T		S	.	.	.						S	S																T	T							S	S	.	.	.	.	.	.																						.		B
Template Predicted Secondary structure																.	.	.																																	.	.	.	.	.	.																						.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.				.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.							.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.
		161	.	.							.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180											.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Query Sequence		P	E	G	.	.	.	.	.	.	Q	F	K	Y	H	V	D	F	E	H	L	H	I	G	E	E	T	.	.	.	.	.	.	.	.	.	.	G	M	I	C	V	S	R	P	T	N	P	T	G	N	V	I	T	D	E	E	L	L	K	L	D	A	L	A	N	Q	H	G	I	P	L	V	I	D	N	A	Y	G	V	P
Query Conservation					.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.									.									.	.	.
Template Conservation																																														.									.	.	.
Template Sequence		R	Y	G	I	I	G	P	I	Y	P	Q	E	M	Q	P	E	T	L	Q	K	K	I	S	E	S	P	L	T	K	D	K	A	G	Q	K	P	S	Y	C	V	V	T	N	C	.	T	Y	D	G	V	C	Y	N	.	.	.	A	K	E	A	Q	D	L	L	E	K	T	S	D	R	L	H	F	D	E	A	W	Y	G	Y
Template Known Secondary structure		T	T	S		B					G	G	G	G	S												T	T	T	G	G	G	T	T				S						S	S	.		T	T	S					.	.	.									T	T	T		S							T	T		T	T
Template Predicted Secondary structure																																														.									.	.	.
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.				330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
		225	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.								.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.								.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.											.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Query SS confidence									.											.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Query Sequence		F	P	G	I	I	F	S	.	E	A	R	P	L	W	N	P	N	I	.	.	.	.	.	.	.	V	L	C	M	S	L	S	K	L	G	L	P	G	S	R	C	G	I	I	I	.	.	.	.	.	.	.	A	N	E	K	I	I	T	A	I	T	N	M	N	G	I	I	S	L	A	P	G	G	I	G	P	A	M	M
Query Conservation									.											.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Alig confidence									.											.	.	.	.	.	.	.									.												.	.	.	.	.	.	.
Template Conservation																																			.
Template Sequence		A	R	F	N	P	I	Y	A	D	H	Y	A	M	R	G	E	P	G	D	H	N	G	P	T	V	F	A	T	H	S	T	H	L	.	L	N	A	L	S	Q	A	S	Y	I	H	V	R	E	G	R	G	A	I	N	F	S	R	F	N	Q	A	Y	M	M	H	A	T	T	S	P	L	Y	A	I	C	A	S	N	D	V
Template Known Secondary structure		G	G	G		G	G	G	T	T	S	S	S	S		S						S	S	B											.		S			T	T										B	T														T	S		S	S
Template Predicted Secondary structure																																			.
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.		.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	E	M	I	K	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y	Y	Q	R	V	Q	E	T	I	A	I	I	R	R	Y	L	P	E	N	R	C	L	I	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	S	M	M	D	G	N	S	G	L	S	L	T	Q	E	V	I	D	E	A	V	D	F	R	Q	A	M	A	R	L	Y	K	E	F	T	A	D	G	S	W	F	F	K	P	W	N	K	E	V	V	T	D	P	Q	T	G	K	T	Y	D	F	A	D	A	P	T	K	L	L	T	T	V	Q	D	C	W	V	M	H
Template Known Secondary structure							S	T																														T	T	T							S	S		S					T	T	T						G	G	G	S									G	G	G	T	B
Template Predicted Secondary structure
Template SS confidence
		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
																				334	.	.	.	.	.	340	.	.	.	.	.										.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	E	G	A	I	F	L	W	L	W	F	.	.	.	.	.	.	.	.	.	K	D	L	P	I	T	T	K	Q	L	Y	Q	R	L	K	A	R	G	V	L	M	V	P	G	H	N	F	F	P	G	L	D	K	P	W	P	H	T	H	Q	C
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.						.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.																																												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	G	E	S	W	H	G	F	K	D	I	P	D	N	W	S	M	L	D	P	I	K	.	.	.	V	S	I	L	A	P	G	M	G	E	D	G	E	L	E	E	T	G	V	P	A	A	L	V	T	A	W	L	G	R	H	G	I	V	P	T	R	T	T	D	F	Q	I	.	.	.	.	.	.	.	.	.	.	.	M
Template Known Secondary structure		T	T		T	T	T			T	T			T	T	S					T	T		.	.	.						S		B		T	T	S	S	B		S	S													T	T	T				S				S	S			.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.																																												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.				.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.												.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	M	N	Y	V	P	E	P	E	K	I	E	A	G	V	K	I	L	A	E	E	I	E	R	A	W	A	E	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	L	F	S	M	G	V	T	R	G	K	W	G	T	L	V	N	T	L	C	S	F	K	R	H	Y	D	A	N	T
Template Known Secondary structure						T	T			T	T	T	T																	T
Template Predicted Secondary structure
Template SS confidence
		580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions