Job Description P09053 Confidence 99.90% Date Thu Jan 5 11:01:50 GMT 2012 Rank 189 Aligned Residues 324 % Identity 12% Template c2r0tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:pyridoxamine 5-phosphate-dependent dehydrase; PDBTitle: crystal sructure of gdp-4-keto-6-deoxymannose-3-dehydratase2 with a trapped plp-glutamate geminal diamine Resolution 1.90 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		P	A	Q	I	P	E	M	Q	D	Y	F	Q	T	L	L	T	D	M	L	E	S	G	K	A	T	D	A	L	C	N	Y	D	G	P	Q	G	K	T	E	L	L	T	L	L	A	G	M	L	R	E	K	L	G	W	D	I	E	P	Q	N	I	A	L	T	N	G	S	Q	S	A	F	F	Y	L	F	N	L	F	A	.
Query Conservation																																																																																	.
Alig confidence																								.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.																								.
Template Conservation																								.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Template Sequence		P	L	A	S	S	T	W	D	D	L	E	Y	K	A	I	Q	S	V	L	D	S	K	.	.	.	.	.	.	.	M	F	T	M	G	E	Y	V	K	Q	Y	E	T	Q	F	A	K	T	F	.	.	.	.	.	.	.	.	G	S	K	Y	A	V	M	V	S	S	G	S	T	A	N	L	L	M	I	A	A	L	F	F
Template Known Secondary structure			S																				T	.	.	.	.	.	.	.			B	S																.	.	.	.	.	.	.	.	T		S						S													T	T	S
Template Predicted Secondary structure																								.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.								.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.									.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
								119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	G	R	R	A	D	G	R	V	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	A	G	L	E	E	D	L	F	V	S	A	R	P	N	I	E	L	L	P	E	G	Q	F	K	Y	H	V	D	F	E	H	L	H	I	G	E	E	T	G	M	I	C	V	S	R	P	T	N	P	T
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.											.	.	.	.	.	.																							.	.	.	.
Template Conservation																		.	.	.	.	.	.																							.	.	.	.
Template Sequence		T	K	K	P	R	L	K	K	G	D	E	I	I	V	P	A	.	.	.	.	.	.	V	S	W	S	T	T	Y	Y	P	L	Q	Q	Y	G	L	R	V	K	F	V	D	I	.	.	.	.	D	I	N	T	L	N	I	D	I	E	S	L	K	E	A	V	T	D	S	T	K	A	I	L	T	V	N	L	L	G	N	P
Template Known Secondary structure		S	S	S		S			T	T							S	.	.	.	.	.	.		S											T	T								B	.	.	.	.		T	T	T		S	B											S	S									B	T	T	B
Template Predicted Secondary structure																		.	.	.	.	.	.																							.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.							.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.					.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		G	N	V	I	T	D	E	E	L	L	K	L	D	A	L	A	N	Q	H	G	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	I	F	S	E	A	R	P	L	W	N	P	N	I	V	L	C	M	S	L	S	K	.	L	G	L	P	G	S	R	C	G	I	I	I	A	N	E	K	I	I	T	A	I	T
Query Conservation																																																											.
Alig confidence			.	.	.	.	.	.																																							.	.	.	.									.
Template Conservation			.	.	.	.	.	.																																							.	.	.	.
Template Sequence		N	.	.	.	.	.	.	N	F	D	E	I	N	K	I	I	G	G	R	D	I	I	L	L	E	D	N	C	E	S	M	G	A	T	F	N	N	K	C	A	G	T	F	G	L	.	.	.	.	M	G	T	F	S	S	F	Y	S	K	H	I	A	T	M	E	G	G	C	I	V	T	D	D	E	E	I	Y	H	I	L
Template Known Secondary structure			.	.	.	.	.	.										T	T	S	S								T	T		T	T				T	T			T	T	S	S	S	S	.	.	.	.								T	T	S	S	S		S	S	S							S
Template Predicted Secondary structure			.	.	.	.	.	.																																							.	.	.	.
Template SS confidence
		140							.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.					.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		272	.	.	.	.	.	.	.	280																														.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	M	N	G	I	I	S	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	G	I	G	P	A	M	M	C	E	M	I	K	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y	Y	Q	R	V	Q	E	T	I	A	I	I	R
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation																																																						.	.	.	.
Template Sequence		L	C	I	R	A	H	G	W	T	R	N	L	P	K	K	N	K	V	T	G	V	K	S	D	D	Q	F	E	E	S	F	K	F	V	L	P	G	Y	N	V	R	P	L	E	M	S	G	A	I	G	I	E	.	.	.	.	Q	L	K	K	L	P	R	F	I	S	V	R	R	K	N	A	E	Y	F	L	D	K	F	K
Template Known Secondary structure					T	B	T	T	B	S	T	T	S		S	B		S	S	S	S	B			S						T	T		B		S				B				B										.	.	.	.																								T
Template Predicted Secondary structure																																																						.	.	.	.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.					.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.					.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure																		.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	Y	L	P	E	N	R	C	L	I	H	K	P	E	G	A	.	.	.	.	I	F	L	W	L	W	F	K	D	L	P	I	T	T	K	Q	L	Y	Q	R	L	K	A	R	G	V	L	M	V	P	G	H	N	F	F	P	G	L	D	K	P	W	P	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																		.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.												.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.
Template Sequence		D	H	.	.	.	P	Y	L	D	V	Q	Q	E	T	G	E	S	S	W	F	G	F	S	F	I	I	K	K	D	S	G	V	I	R	K	Q	L	V	E	N	L	N	S	A	G	I	E	C	R	P	I	V	T	G	N	F	L	K	N	T	D	V	L	K	Y	F	D	Y	T	V	H	N	N	V	D	N	A	E	Y	L
Template Known Secondary structure		T		.	.	.	S	S								S	B												T	T	S														T	T	B			B		S	T	T	S		G	G	G						T	T							S
Template Predicted Secondary structure				.	.	.
Template SS confidence
		286	.				.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		383	.	.	.	.	.	.	390	.	.	.			.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		T	H	Q	C	M	R	M	N	Y	V	P	.	.	E	P	E	K	I	E	A	G	V	K	I	L
Query Conservation													.	.
Alig confidence													.	.
Template Conservation
Template Sequence		D	K	N	G	L	F	V	G	N	H	Q	I	E	L	F	D	E	I	D	Y	L	R	E	V	L
Template Known Secondary structure												S	S													T
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions