Job Description P09053 Confidence 99.97% Date Thu Jan 5 11:01:50 GMT 2012 Rank 106 Aligned Residues 346 % Identity 12% Template c2huuA_ PDB info PDB header:transferase Chain: A: PDB Molecule:alanine glyoxylate aminotransferase; PDBTitle: crystal structure of aedes aegypti alanine glyoxylate2 aminotransferase in complex with alanine Resolution 2.10 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	D	G	L	R	T	P	G	A	I	M	L	G	G	G	N	P	A	Q	I	P	E	M	Q	D	Y	F	Q	T	L	L	T	D	M	L	E	S	G	K	A	T	D	A	L	C	N	Y	D	G	P	Q	G	K	T	E	L	L	T	L	L	A	G	M	L	R	E	K	L	G	W	D	I	E	P	Q	N	I	A	L
Query Conservation
Alig confidence																		.	.	.													.	.	.	.	.	.	.	.	.	.	.																															.
Template Conservation																		.	.	.													.	.	.	.	.	.	.	.	.	.	.																															.
Template Sequence		L	R	E	P	L	V	T	P	N	K	L	L	M	G	P	G	.	.	.	P	S	N	A	P	Q	R	V	L	D	A	M	.	.	.	.	.	.	.	.	.	.	.	S	R	P	I	L	G	H	L	H	P	E	T	L	K	I	M	D	D	I	K	E	G	V	R	Y	L	F	Q	T	N	.	N	I	A	T	F	C	L
Template Known Secondary structure		G	G	S											S	S	S	.	.	.												T	.	.	.	.	.	.	.	.	.	.	.	T	S					T	T	S																			T			.		S
Template Predicted Secondary structure																		.	.	.													.	.	.	.	.	.	.	.	.	.	.																															.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.				.	.	.	30	.	.	.	.	.	.	.	.												.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.			.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.																																							.
Query SS confidence																																									.	.																																							.
Query Sequence		T	N	G	S	Q	S	A	F	F	Y	L	F	N	L	F	A	G	R	R	A	D	G	R	V	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	.	.	D	A	G	L	E	E	D	L	F	V	S	A	R	P	N	I	E	L	L	P	E	G	Q	F	K	Y	H	V	D	F	E	H	L	H	I	G	E	E	.
Query Conservation																																									.	.																																							.
Alig confidence																												.	.	.	.	.	.								.	.																.	.	.	.	.																			.
Template Conservation																												.	.	.	.	.	.																									.	.	.	.	.
Template Sequence		S	A	S	G	H	G	G	M	E	A	T	L	C	N	L	L	E	D	G	D	V	I	L	I	G	H	.	.	.	.	.	.	T	G	H	W	G	D	R	S	A	D	M	A	T	R	Y	G	A	D	V	R	V	V	K	S	.	.	.	.	.	K	V	G	Q	S	L	S	L	D	E	I	R	D	A	L	L	I	H	K
Template Known Secondary structure		S	S																T	T								.	.	.	.	.	.	S	S													T	T									.	.	.	.	.		T	T
Template Predicted Secondary structure																												.	.	.	.	.	.																									.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.							.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.						.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	M	I	C	V	S	R	P	T	N	P	T	G	N	V	I	T	D	E	E	L	L	K	L	D	A	L	A	N	Q	H	G	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	I	F	S	E	A	R	P	L	W	N	P	N	I	V	L	C	M	S	L	S	K	L	G	L	P	G	S	R	C	G	I
Query Conservation
Alig confidence																				.	.	.																																				.	.	.	.	.	.
Template Conservation																				.	.	.																																				.	.	.	.	.	.
Template Sequence		P	S	V	L	F	L	T	Q	G	D	S	S	T	G	V	L	Q	G	.	.	.	L	E	G	V	G	A	L	C	H	Q	H	N	C	L	L	I	V	D	T	V	A	S	L	G	G	A	P	M	F	M	D	R	W	E	I	.	.	.	.	.	.	D	A	M	Y	T	G	S	Q	V	L	G	A	P	P	G	I	T	P
Template Known Secondary structure			S						S			T	T	T	T					.	.	.		T	T								T	T								T	T	T	B	T	T	B				T	T	T	T	T		.	.	.	.	.	.	S													S	S
Template Predicted Secondary structure																				.	.	.																																				.	.	.	.	.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.				.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.							.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.																		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	I	A	N	E	K	I	I	T	A	I	T	N	M	N	G	I	I	S	L	A	P	G	G	I	G	P	A	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	C	E	M	I	K	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y	Y	Q	R	V	Q	E	T	I	A	I	I	R
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	S	F	S	H	R	A	V	E	R	Y	K	R	R	N	T	K	V	K	V	Y	Y	W	D	M	S	L	V	G	D	Y	W	G	C	F	G	R	P	R	I	Y	H	H	T	I	S	S	T	L	L	Y	G	L	R	E	A	I	A	M	A	C	E	E	G	L	P	A	L	I	A	R	H	E	D	C	A	K	R	L	Y
Template Known Secondary structure														T		S	S			S		G	G	G									T	T		S	S	S					S
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.				.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390				.	.	.	.	.
Predicted Secondary structure																.	.	.																											.																													.	.	.
Query SS confidence																.	.	.																											.																													.	.	.
Query Sequence		R	Y	L	P	E	N	R	C	L	I	H	K	P	E	.	.	.	G	A	I	F	L	W	L	W	F	K	D	L	P	I	T	T	K	Q	L	Y	Q	R	L	K	A	R	.	G	V	L	M	V	P	G	H	N	F	F	P	G	L	D	K	P	W	P	H	T	H	Q	C	M	R	M	N	.	.	.	Y	V	P	E	P
Query Conservation																.	.	.																											.																													.	.	.
Alig confidence																.	.	.												.															.											.	.	.	.	.	.	.	.	.										.	.	.
Template Conservation																														.																										.	.	.	.	.	.	.	.	.
Template Sequence		R	G	L	Q	D	A	G	F	E	L	Y	A	D	P	K	D	R	L	S	T	V	T	T	I	K	V	P	Q	.	G	V	D	W	L	K	A	A	Q	Y	A	M	K	T	Y	L	V	E	I	S	G	G	L	G	P	.	.	.	.	.	.	.	.	.	T	A	G	Q	V	F	R	I	G	L	M	G	Q	N	A	T	T
Template Known Secondary structure							T	T			B	S	S		G	G	G	B		T	T								T	.	T																			B				G	G	.	.	.	.	.	.	.	.	.	G	T	T	T								G	G	G		S
Template Predicted Secondary structure																														.																										.	.	.	.	.	.	.	.	.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.										350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	I	E	A	G	V	K	I	L	A	E	E	I	E	R	A	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	V	D	R	V	L	Q	V	F	Q	E	A	V	A	A	V	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions