Job Description P09053 Confidence 99.97% Date Thu Jan 5 11:01:50 GMT 2012 Rank 97 Aligned Residues 355 % Identity 12% Template c2dr1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:386aa long hypothetical serine aminotransferase; PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3 Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	L	L	M	E	D	L	N	D	G	L	R	T	P	G	A	I	M	L	G	G	G	N	P	A	Q	I	P	E	M	Q	D	Y	F	Q	T	L	L	T	D	M	L	E	S	G	K	A	T	D	A	L	C	N	Y	D	G	P	Q	G	K	T	E	L	L	T	L	L	A	G	M	L	R	E	K	L	G	W	D	I
Query Conservation
Alig confidence															.										.						.	.	.	.	.	.	.																				.	.																.	.	.	.				.
Template Conservation															.										.						.	.	.	.	.	.	.																				.	.																.	.	.	.				.
Template Sequence		F	E	E	A	F	K	E	V	Y	E	M	V	K	.	P	K	Y	K	L	F	T	A	G	.	P	V	A	C	F	.	.	.	.	.	.	.	P	E	V	L	E	I	M	K	V	Q	M	F	S	H	R	S	K	E	Y	.	.	R	K	V	H	M	D	T	V	E	R	L	R	E	F	L	.	.	.	.	E	V	E	.
Template Known Secondary structure														S	.			S					S	S	.	S					.	.	.	.	.	.	.							T	T	S					T	T	S				.	.																.	.	.	.	T		S	.
Template Predicted Secondary structure															.										.						.	.	.	.	.	.	.																				.	.																.	.	.	.				.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.		.	20	.	.	.	.	.	.	.		.	.	30	.	.								.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.	.					.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		E	P	Q	N	I	A	L	T	N	G	S	Q	S	A	F	F	Y	L	F	N	L	F	A	G	R	R	A	D	G	R	V	K	K	V	L	F	P	L	A	P	E	Y	.	.	I	G	Y	A	D	A	G	L	E	E	D	L	F	V	S	A	R	P	N	I	E	L	L	P	E	G	Q	F	K	Y	H	V	D	F	E	H
Query Conservation																																												.	.
Alig confidence																																			.	.	.	.	.	.				.	.																				.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.																									.	.	.	.	.
Template Sequence		K	G	E	V	L	L	V	P	S	S	G	T	G	I	M	E	A	S	I	R	N	G	V	S	K	G	G	K	V	L	V	T	I	.	.	.	.	.	.	I	G	A	F	G	K	R	Y	K	E	V	V	E	S	N	G	R	K	A	V	V	L	E	Y	.	.	.	.	.	E	P	G	K	A	V	K	P	E	D	L	D
Template Known Secondary structure		S	S						S	S														S		T	T								.	.	.	.	.	.	S	S													T	T									.	.	.	.	.		T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.																									.	.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.							.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.						.	.	.	130	.	.	.	.	.	.	.	.
		174	.	.	.			.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		L	H	I	G	.	.	E	E	T	G	M	I	C	V	S	R	P	T	N	P	T	G	N	V	I	T	D	E	E	L	L	K	L	D	A	L	A	N	Q	H	G	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	I	F	S	E	A	R	P	L	W	N	P	N	I	V	L	C	M	S	L	S	K	L	G
Query Conservation						.	.
Alig confidence						.	.																					.	.	.																																					.	.	.	.	.
Template Conservation																												.	.	.																																					.	.	.	.	.
Template Sequence		D	A	L	R	K	N	P	D	V	E	A	V	T	I	T	Y	N	E	T	S	T	G	V	L	N	P	.	.	.	L	P	E	L	A	K	V	A	K	E	H	D	K	L	V	F	V	D	A	V	S	A	M	G	G	A	D	I	K	F	D	K	W	G	L	D	.	.	.	.	.	V	V	F	S	S	S	Q	K	A	F
Template Known Secondary structure								T	T								S			T	T	T	T					.	.	.											T	T								T	T	T	B	T	T	B				T	T	T	T	T		S	.	.	.	.	.						T	T	S	T	T
Template Predicted Secondary structure																												.	.	.																																					.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.				.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200						.	.	.	.	.	.	.	.	.	210
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.																		.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	P	G	S	R	C	G	I	I	I	A	N	E	K	I	I	T	A	I	T	N	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	I	I	S	L	A	P	G	G	I	G	P	A	M	M	C	E	M	I	K	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y	Y	Q	R	V
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	V	P	P	G	L	A	I	G	A	F	S	E	R	F	L	E	I	A	E	K	M	P	E	R	G	W	Y	F	D	I	P	L	Y	V	K	Y	L	K	E	K	E	S	T	P	S	T	P	P	M	P	Q	V	F	G	I	N	V	A	L	R	I	I	E	K	M	G	G	K	E	K	W	L	E	M	Y	E	K	R	A
Template Known Secondary structure					S	S															T	T		T	T			S	T	T													S	S		S	S																				T	T
Template Predicted Secondary structure
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		Q	E	T	I	A	I	I	R	R	Y	L	P	E	N	R	C	L	I	H	K	P	E	G	A	I	F	L	W	L	W	F	K	D	L	P	I	T	T	K	Q	L	Y	Q	R	L	K	A	R	G	V	L	M	V	P	G	H	N	F	F	P	G	L	D	K	P	W	P	H	T	H	Q	C	M	R	M	N	Y	V	P	.
Query Conservation																																																																																	.
Alig confidence											.																								.																									.	.	.	.	.	.	.	.	.													.
Template Conservation											.																								.																									.	.	.	.	.	.	.	.	.
Template Sequence		K	M	V	R	E	G	V	R	E	.	I	G	L	D	I	L	A	E	P	G	H	E	S	P	T	I	T	A	V	L	T	P	P	.	G	I	K	G	D	E	V	Y	E	A	M	R	K	R	G	F	E	L	A	K	G	Y	G	S	.	.	.	.	.	.	.	.	.	V	K	E	K	T	F	R	I	G	H	M	G	Y
Template Known Secondary structure											.	T	T			B	S	S		T	T		B		S	S								T	.	T													T	T								G	G	.	.	.	.	.	.	.	.	.	G	T	T	T								S	S
Template Predicted Secondary structure											.																								.																									.	.	.	.	.	.	.	.	.
Template SS confidence
		291	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.										.	.	.	350	.	.	.	.	.	.	.	.	.
			394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	E	P	E	K	I	E	A	G	V	K	I	L	A	E	E	I	E	R	A	W	A	E	S
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		M	K	F	E	D	I	Q	E	M	L	D	N	L	R	E	V	I	N	E	L	K	K	Q	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions