Job Description P09053 Confidence 99.95% Date Thu Jan 5 11:01:50 GMT 2012 Rank 132 Aligned Residues 337 % Identity 13% Template c1oatB_ PDB info PDB header:aminotransferase Chain: B: PDB Molecule:ornithine aminotransferase; PDBTitle: ornithine aminotransferase Resolution 2.50 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	I	M	L	G	G	G	N	P	A	Q	I	P	E	M	Q	D	Y	F	Q	T	L	L	T	D	M	L	E	S	G	K	A	T	D	A	L	C	N	Y	D	G	P	Q	G	K	T	E	L	L	T	L	L	A	G	M	L	R	E	K	L	G	W	D	I	E	P	Q	N	I	A	L	T	N	G	S	Q	S	A	F
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.														.	.	.	.	.	.	.																									.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.														.	.	.	.	.	.	.																									.	.	.	.
Template Sequence		S	A	V	N	Q	G	H	C	H	P	.	.	.	.	.	.	.	.	K	I	V	N	A	L	K	S	Q	V	D	K	L	.	.	.	.	.	.	.	T	L	T	S	R	A	F	Y	N	N	V	L	G	E	Y	E	E	Y	I	T	K	L	F	N	.	.	.	.	Y	H	K	V	L	P	M	N	T	G	V	E	A	G
Template Known Secondary structure			T		T	T		B	T			.	.	.	.	.	.	.	.											T	T		.	.	.	.	.	.	.	S				T	T	S			S	S													T	.	.	.	.		S						S	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.														.	.	.	.	.	.	.																									.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.									.	.	.	.	100	.	.	.	.	.	.	.	.								.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.	.	.	140	.	.	.	.	.	.
		111	.	.	.	.	.	.										.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.			.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.																																																		.	.
Query SS confidence									.	.	.	.	.	.	.	.	.																																																		.	.
Query Sequence		F	Y	L	F	N	L	F	.	.	.	.	.	.	.	.	.	A	G	R	R	A	D	G	R	V	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	A	G	L	E	E	D	L	F	V	S	A	R	P	N	I	E	L	L	P	E	G	Q	F	K	.	.	Y	H	V	D	F	E	H	L	H	I	G	E	E
Query Conservation									.	.	.	.	.	.	.	.	.																																																		.	.
Alig confidence									.	.	.	.	.	.	.	.	.									.	.	.	.																																						.	.
Template Conservation																										.	.	.	.
Template Sequence		E	T	A	C	K	L	A	R	K	W	G	Y	T	V	K	G	I	Q	K	Y	K	A	K	I	.	.	.	.	V	F	A	A	G	N	F	W	G	R	T	L	S	A	I	S	S	S	T	D	P	T	S	Y	D	G	F	G	P	F	M	P	G	F	D	I	I	P	Y	N	D	L	P	A	L	E	R	A	L	Q	D	P
Template Known Secondary structure															T	T				T	T					.	.	.	.				T	T					S	S					T	T								T	T	S		S			S	S						T	T									T	T	S	T
Template Predicted Secondary structure																										.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170					.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		180	.	.	.	.	.	.	.	.			.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.
Predicted Secondary structure											.	.																																																																			.
Query SS confidence											.	.																																																																			.
Query Sequence		T	G	M	I	C	V	S	R	P	.	.	T	N	P	T	G	N	V	I	T	D	E	E	L	L	K	L	D	A	L	A	N	Q	H	G	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	I	F	S	E	A	R	P	L	W	N	P	N	I	V	L	C	M	S	L	S	K	L	G	L	P	G	.	S	R
Query Conservation											.	.																																																																			.
Alig confidence											.	.																																																								.	.										.
Template Conservation																																																																				.	.
Template Sequence		N	V	A	A	F	M	V	E	P	I	Q	G	E	A	G	V	V	V	P	D	P	G	Y	L	M	G	V	R	E	L	C	T	R	H	Q	V	L	F	I	A	D	E	I	Q	T	G	L	A	R	T	G	R	W	L	A	V	D	Y	E	N	V	R	P	D	I	V	.	.	L	L	G	K	A	L	S	G	G	L	Y	P
Template Known Secondary structure		T								S	S	B	T	T	T	T		B				T	T													T								T	T	T	T	T	T	T	T	S	S	S	S	G	G	G	G	G	T				S			.	.				G	G	G	G	T	T	S	S
Template Predicted Secondary structure																																																																				.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.			.	290	.	.	.	.	.	.	.	.	.	300
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	G	I	I	I	A	N	E	K	I	I	T	A	I	T	N	M	N	G	I	I	S	L	A	P	G	G	I	G	P	A	M	M	C	E	M	I	K	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y	Y	Q	R	V	Q	E	T	I	A	I	I	R	R	Y	L	P	E	N	R	C	L	I	H	K	P	E
Query Conservation
Alig confidence																																								.	.	.	.	.																									.
Template Conservation																																								.	.	.	.	.																									.
Template Sequence		V	S	A	V	L	C	D	D	D	I	M	L	T	I	K	P	G	E	H	G	S	T	Y	G	G	N	P	L	G	C	R	V	A	I	A	A	L	E	.	.	.	.	.	V	L	E	E	E	N	L	A	E	N	A	D	K	L	G	I	I	L	R	N	E	L	M	K	.	L	P	S	D	V	V	T	A	V	R	G	K
Template Known Secondary structure													T	T	S		T	T	S	S			S	S	T	T														.	.	.	.	.					T	T																	T	T	.	S		T	T	T
Template Predicted Secondary structure																																								.	.	.	.	.																									.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.						.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.			390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		G	A	I	F	L	W	L	W	F	K	D	L	P	I	T	T	K	Q	L	Y	Q	R	L	K	A	R	G	V	L	M	V	P	G	H	N	F	F	P	G	L	D	K	P	W	P	H	T	H	Q	C	M	R	M	.	.	N	Y	V	P	E	P	E	K	I	E	A	G	V	K	I	L	A	E	E	I	E	R
Query Conservation																																																							.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	L	L	N	A	I	V	I	K	E	T	K	D	W	D	A	W	K	V	C	L	R	L	R	D	N	G	L	L	A	K	P	.	.	.	.	.	.	.	.	.	.	.	.	.	T	H	G	D	I	I	R	F	A	P	P	L	V	I	K	E	D	E	L	R	E	S	I	E	I	I	N	K	T	I	L	S
Template Known Secondary structure		T	T									B	T	T	B												T	T					B	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S	S								T	T																			T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.														.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions