Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP69425
DateWed Jan 25 15:21:01 GMT 2012
Unique Job ID04c2919bb428e8db

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2l16A_
Top template information
PDB header:protein transport
Chain: A: PDB Molecule:sec-independent protein translocase protein tatad;
PDBTitle: solution structure of bacillus subtilits tatad protein in dpc micelles
Confidence and coverage
Confidence: 99.8% Coverage: 30%
51 residues ( 30% of your sequence) have been modelled with 99.8% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 57% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQ
Secondary structure 
SS confidence 
Disorder  ?????
??
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  DSLKKVEKASLTNLTPELKASMDELRQAAESMKRSYVANDPEKASDEAHTIHNPVVKDNE
Secondary structure 
SS confidence 
Disorder 
???????
?????????????????????????????????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.
Sequence  AAHEGVTPAAAQTQASSPEQKPETTPEPVVKPAADAEPKTAAPSPSSSDKP
Secondary structure 
SS confidence 
Disorder  ???????????????????????????????????????????????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2l16 chain A

3D model

Region: 1 - 51
Aligned: 51
Modelled: 51
Confidence: 99.8%
Identity: 27%
PDB header:protein transport
Chain: A: PDB Molecule:sec-independent protein translocase protein tatad;
PDBTitle: solution structure of bacillus subtilits tatad protein in dpc micelles

Phyre2

PDB 2axt chain J domain 1

3D model

Region: 9 - 21
Aligned: 13
Modelled: 13
Confidence: 49.7%
Identity: 31%
Fold: Single transmembrane helix
Superfamily: Photosystem II reaction center protein J, PsbJ
Family: PsbJ-like

Phyre2

PDB 1ohu chain A

3D model

Region: 1 - 39
Aligned: 39
Modelled: 39
Confidence: 45.3%
Identity: 13%
Fold: Toxins' membrane translocation domains
Superfamily: Bcl-2 inhibitors of programmed cell death
Family: Bcl-2 inhibitors of programmed cell death

Phyre2

PDB 2axt chain I domain 1

3D model

Region: 9 - 21
Aligned: 13
Modelled: 13
Confidence: 37.6%
Identity: 31%
Fold: Single transmembrane helix
Superfamily: Photosystem II reaction center protein I, PsbI
Family: PsbI-like

Phyre2

PDB 1bxl chain A

3D model

Region: 1 - 39
Aligned: 39
Modelled: 39
Confidence: 30.0%
Identity: 18%
Fold: Toxins' membrane translocation domains
Superfamily: Bcl-2 inhibitors of programmed cell death
Family: Bcl-2 inhibitors of programmed cell death

Phyre2

PDB 2cqq chain A domain 1

3D model

Region: 12 - 50
Aligned: 39
Modelled: 39
Confidence: 29.8%
Identity: 15%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: Myb/SANT domain

Phyre2

PDB 3prr chain L

3D model

Region: 6 - 19
Aligned: 14
Modelled: 14
Confidence: 29.5%
Identity: 29%
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer

Phyre2

PDB 1s5l chain L

3D model

Region: 6 - 19
Aligned: 14
Modelled: 14
Confidence: 29.5%
Identity: 29%
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center

Phyre2

PDB 3bz1 chain L

3D model

Region: 6 - 19
Aligned: 14
Modelled: 14
Confidence: 29.5%
Identity: 29%
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 12 of 2). this file contains first monomer of psii dimer

Phyre2

PDB 3bz2 chain L

3D model

Region: 6 - 19
Aligned: 14
Modelled: 14
Confidence: 29.5%
Identity: 29%
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 22 of 2). this file contains second monomer of psii dimer

Phyre2

PDB 3prq chain L

3D model

Region: 6 - 19
Aligned: 14
Modelled: 14
Confidence: 29.5%
Identity: 29%
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer

Phyre2

PDB 3arc chain L

3D model

Region: 6 - 19
Aligned: 14
Modelled: 14
Confidence: 29.5%
Identity: 29%
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution

Phyre2

PDB 2axt chain L domain 1

3D model

Region: 6 - 19
Aligned: 14
Modelled: 14
Confidence: 29.5%
Identity: 29%
Fold: Single transmembrane helix
Superfamily: Photosystem II reaction center protein L, PsbL
Family: PsbL-like

Phyre2

PDB 2axt chain L

3D model

Region: 6 - 19
Aligned: 14
Modelled: 14
Confidence: 29.5%
Identity: 29%
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus

Phyre2

PDB 1s5l chain L

3D model

Region: 6 - 19
Aligned: 14
Modelled: 14
Confidence: 29.5%
Identity: 29%
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center

Phyre2

PDB 3a0b chain L

3D model

Region: 6 - 19
Aligned: 14
Modelled: 14
Confidence: 29.5%
Identity: 29%
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of br-substituted photosystem ii complex

Phyre2

PDB 3a0h chain L

3D model

Region: 6 - 19
Aligned: 14
Modelled: 14
Confidence: 29.5%
Identity: 29%
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of i-substituted photosystem ii complex

Phyre2

PDB 3kzi chain L

3D model

Region: 6 - 19
Aligned: 14
Modelled: 14
Confidence: 29.5%
Identity: 29%
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii

Phyre2

PDB 2axt chain L

3D model

Region: 6 - 19
Aligned: 14
Modelled: 14
Confidence: 29.5%
Identity: 29%
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus

Phyre2

PDB 3a0h chain L

3D model

Region: 6 - 19
Aligned: 14
Modelled: 14
Confidence: 29.5%
Identity: 29%
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of i-substituted photosystem ii complex

Phyre2
1
c2l16A_
2
d2axtj1
3
d1ohua_
4
d2axti1
5
d1bxla_
6
d2cqqa1
7
c3prrL_
8
c1s5lL_
9
c3bz1L_
10
c3bz2L_
11
c3prqL_
12
c3arcL_
13
d2axtl1
14
c2axtl_
15
c1s5ll_
16
c3a0bL_
17
c3a0hL_
18
c3kziL_
19
c2axtL_
20
c3a0hl_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2l16A_
99.8 27 PDB header:protein transport
Chain: A: PDB Molecule:sec-independent protein translocase protein tatad;
PDBTitle: solution structure of bacillus subtilits tatad protein in dpc micelles
2d2axtj1
49.7 31 Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein J, PsbJ
Family:PsbJ-like
3d1ohua_
45.3 13 Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
4d2axti1
37.6 31 Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein I, PsbI
Family:PsbI-like
5d1bxla_
30.0 18 Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
6d2cqqa1
29.8 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain
7c3prrL_
29.5 29 PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer
8c1s5lL_
29.5 29 PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
9c3bz1L_
29.5 29 PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 12 of 2). this file contains first monomer of psii dimer
10c3bz2L_
29.5 29 PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 22 of 2). this file contains second monomer of psii dimer
11c3prqL_
29.5 29 PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer
12c3arcL_
29.5 29 PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
13d2axtl1
29.5 29 Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein L, PsbL
Family:PsbL-like
14c2axtl_
29.5 29 PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
15c1s5ll_
29.5 29 PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
16c3a0bL_
29.5 29 PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of br-substituted photosystem ii complex
17c3a0hL_
29.5 29 PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of i-substituted photosystem ii complex
18c3kziL_
29.5 29 PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii
19c2axtL_
29.5 29 PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
20c3a0hl_
29.5 29 PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of i-substituted photosystem ii complex
21c3a0bl_
not modelled 29.5 29 PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of br-substituted photosystem ii complex
22d1pq1a_
not modelled 24.4 16 Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
23c3arcl_
not modelled 23.0 29 PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
24c2bzwB_
not modelled 22.2 15 PDB header:transcription
Chain: B: PDB Molecule:bcl2-antagonist of cell death;
PDBTitle: the crystal structure of bcl-xl in complex with full-length2 bad
25c3qbrA_
not modelled 21.2 16 PDB header:apoptosis
Chain: A: PDB Molecule:sjchgc06286 protein;
PDBTitle: bakbh3 in complex with sja
26d1zy3a1
not modelled 20.1 11 Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
27d2jm6b1
not modelled 16.7 15 Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
28c2voyH_
not modelled 16.1 20 PDB header:hydrolase
Chain: H: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
29d1ysga1
not modelled 14.8 16 Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
30c1yceD_
not modelled 14.4 25 PDB header:membrane protein
Chain: D: PDB Molecule:subunit c;
PDBTitle: structure of the rotor ring of f-type na+-atpase from ilyobacter2 tartaricus
31c2nogA_
not modelled 14.1 7 PDB header:dna binding protein
Chain: A: PDB Molecule:iswi protein;
PDBTitle: sant domain structure of xenopus remodeling factor iswi
32c1vf5U_
not modelled 12.5 45 PDB header:photosynthesis
Chain: U: PDB Molecule:protein pet n;
PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus
33c1vf5H_
not modelled 12.5 45 PDB header:photosynthesis
Chain: H: PDB Molecule:protein pet n;
PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus
34c1g5jB_
not modelled 12.2 23 PDB header:apoptosis
Chain: B: PDB Molecule:bad protein;
PDBTitle: complex of bcl-xl with peptide from bad
35c2rocB_
not modelled 11.8 17 PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-binding component 3;
PDBTitle: solution structure of mcl-1 complexed with puma
36c2yv6A_
not modelled 11.0 16 PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2 homologous antagonist/killer;
PDBTitle: crystal structure of human bcl-2 family protein bak
37c2zjsE_
not modelled 10.9 21 PDB header:protein transport/immune system
Chain: E: PDB Molecule:preprotein translocase sece subunit;
PDBTitle: crystal structure of secye translocon from thermus thermophilus with a2 fab fragment
38d1o0la_
not modelled 10.6 11 Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
39d1g5ma_
not modelled 10.6 11 Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
40c2o2fA_
not modelled 9.6 19 PDB header:apoptosis
Chain: A: PDB Molecule:apoptosis regulator bcl-2;
PDBTitle: solution structure of the anti-apoptotic protein bcl-2 in2 complex with an acyl-sulfonamide-based ligand
41c2xa0A_
not modelled 9.5 16 PDB header:apoptosis
Chain: A: PDB Molecule:apoptosis regulator bcl-2;
PDBTitle: crystal structure of bcl-2 in complex with a bax bh32 peptide
42c2e75H_
not modelled 9.5 23 PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus
43c2e76H_
not modelled 9.5 23 PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
44c2e74H_
not modelled 9.5 23 PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus
45d1f16a_
not modelled 9.2 18 Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
46c2zt9H_
not modelled 9.1 45 PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: crystal structure of the cytochrome b6f complex from nostoc sp. pcc2 7120
47d2e74h1
not modelled 8.9 45 Fold:Single transmembrane helix
Superfamily:PetN subunit of the cytochrome b6f complex
Family:PetN subunit of the cytochrome b6f complex
48c2vofB_
not modelled 8.8 18 PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-binding component 3;
PDBTitle: structure of mouse a1 bound to the puma bh3-domain
49d2ponb1
not modelled 8.7 16 Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
50d1x4ta1
not modelled 8.7 23 Fold:Long alpha-hairpin
Superfamily:ISY1 domain-like
Family:ISY1 N-terminal domain-like
51c2jpxA_
not modelled 8.1 50 PDB header:viral protein
Chain: A: PDB Molecule:vpu protein;
PDBTitle: a18h vpu tm structure in lipid bilayers
52c2kuaA_
not modelled 7.5 15 PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2-like protein 10;
PDBTitle: solution structure of a divergent bcl-2 protein
53c2a5yA_
not modelled 7.5 16 PDB header:apoptosis
Chain: A: PDB Molecule:apoptosis regulator ced-9;
PDBTitle: structure of a ced-4/ced-9 complex
54c2d2cU_
not modelled 7.5 45 PDB header:photosynthesis
Chain: U: PDB Molecule:cytochrome b6-f complex subunit viii;
PDBTitle: crystal structure of cytochrome b6f complex with dbmib from2 m. laminosus
55c2d2cH_
not modelled 7.5 45 PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit viii;
PDBTitle: crystal structure of cytochrome b6f complex with dbmib from2 m. laminosus
56d1rp3a1
not modelled 7.4 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma3 domain
57d1f6va_
not modelled 7.3 20 Fold:C-terminal domain of B transposition protein
Superfamily:C-terminal domain of B transposition protein
Family:C-terminal domain of B transposition protein
58c3oqvA_
not modelled 7.0 19 PDB header:protein binding
Chain: A: PDB Molecule:albc;
PDBTitle: albc, a cyclodipeptide synthase from streptomyces noursei
59c1qoyA_
not modelled 6.9 13 PDB header:toxin
Chain: A: PDB Molecule:hemolysin e;
PDBTitle: e.coli hemolysin e (hlye, clya, shea)
60d1ofcx1
not modelled 6.8 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain
61c2ks1B_
not modelled 6.5 36 PDB header:transferase
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
62c2o60B_
not modelled 6.3 32 PDB header:metal binding protein
Chain: B: PDB Molecule:peptide corresponding to calmodulin binding domain of
PDBTitle: calmodulin bound to peptide from neuronal nitric oxide synthase
63c3mk7F_
not modelled 6.1 11 PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase
64c2vofD_
not modelled 6.0 22 PDB header:apoptosis
Chain: D: PDB Molecule:bcl-2-binding component 3;
PDBTitle: structure of mouse a1 bound to the puma bh3-domain
65c2kncB_
not modelled 5.7 27 PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
66c3qz6A_
not modelled 5.7 32 PDB header:lyase
Chain: A: PDB Molecule:hpch/hpai aldolase;
PDBTitle: the crystal structure of hpch/hpai aldolase from desulfitobacterium2 hafniense dcb-2
67d1r9wa_
not modelled 5.7 22 Fold:Origin of replication-binding domain, RBD-like
Superfamily:Origin of replication-binding domain, RBD-like
Family:Replication initiation protein E1
68c1wu0A_
not modelled 5.5 20 PDB header:hydrolase
Chain: A: PDB Molecule:atp synthase c chain;
PDBTitle: solution structure of subunit c of f1fo-atp synthase from2 the thermophilic bacillus ps3
69c2voyG_
not modelled 5.4 36 PDB header:hydrolase
Chain: G: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
70d1eq1a_
not modelled 5.3 8 Fold:Apolipophorin-III
Superfamily:Apolipophorin-III
Family:Apolipophorin-III
71d1dula_
not modelled 5.3 7 Fold:Signal peptide-binding domain
Superfamily:Signal peptide-binding domain
Family:Signal peptide-binding domain
72d2b50a1
not modelled 5.2 18 Fold:Nuclear receptor ligand-binding domain
Superfamily:Nuclear receptor ligand-binding domain
Family:Nuclear receptor ligand-binding domain
73c2wz1B_
not modelled 5.1 17 PDB header:lyase
Chain: B: PDB Molecule:guanylate cyclase soluble subunit beta-1;
PDBTitle: structure of the catalytic domain of human soluble2 guanylate cyclase 1 beta 3.

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0