Job Description P0AFA9 Confidence 99.95% Date Thu Jan 5 11:25:47 GMT 2012 Rank 1 Aligned Residues 268 % Identity 13% Template c3fh6F_ PDB info PDB header:transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli Resolution 4.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.					.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.						60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure															.	.	.	.																																															.	.	.	.	.
Query SS confidence															.	.	.	.																																															.	.	.	.	.
Query Sequence		M	N	F	F	L	S	S	R	W	S	V	R	L	.	.	.	.	A	L	I	I	I	A	L	L	A	L	I	A	L	T	S	Q	W	W	L	P	Y	D	P	Q	A	I	D	L	P	S	R	L	L	S	P	D	A	Q	H	W	L	G	T	D	H	L	.	.	.	.	.	G	R	D	I	F	S	R	L	M	A	A	T
Query Conservation															.	.	.	.																																															.	.	.	.	.
Alig confidence															.	.	.	.																																															.	.	.	.	.
Template Conservation
Template Sequence		I	T	T	L	I	L	S	S	A	G	L	Y	I	Y	V	Y	P	G	M	A	G	M	G	L	F	V	L	F	P	L	V	C	T	I	A	I	A	F	T	N	Y	S	S	T	N	Q	L	T	F	E	R	A	Q	E	V	L	L	D	R	S	K	N	F	T	R	V	F	T	D	E	G	I	Q	K	P	F	L	A	I	F
Template Known Secondary structure																											T									T	T	S	S	S	S		S	S	S		S	S											T				T	T					S		S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	V	S	L	G	S	V	M	A	C	L	L	L	V	L	T	L	G	L	V	I	G	G	S	A	G	L	I	G	G	R	V	D	Q	A	T	M	R	V	A	D	M	F	M	T	F	P	T	S	I	L	S	F	F	M	V	G	V	L	G	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	W	T	V	V	F	S	L	I	T	V	F	L	T	V	A	V	G	M	V	L	A	C	L	V	Q	W	E	A	L	R	G	K	A	V	Y	R	V	L	L	I	L	P	Y	A	V	P	S	F	I	S	I	L	I	F	K	G	L	F	N	Q	S	F	G	E	I	N	M	M	L	S	A	L	F	G	V	K	P	A	W
Template Known Secondary structure																											T		S	S	S	S															S		S											S		S	S	S	S										S	S					S
Template Predicted Secondary structure
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
								134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	L	T	N	V	I	I	A	I	A	L	S	H	W	A	W	Y	A	R	M	V	R	S	L	V	I	S	L	R	Q	R	E	F	V	L	A	S	R	L	S	G	A	G	H	V	R	V	F	V	D	H	L	A	G	A	V	I	P	S	L	L	V	L	A	T	L	D	I	G	H	M	M	L	H	V
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.
Template Conservation
Template Sequence		F	S	D	P	T	T	A	R	T	M	L	I	I	V	N	T	W	L	G	Y	P	Y	M	M	I	L	C	M	G	L	L	K	A	I	P	D	D	L	Y	E	A	S	A	M	D	G	A	G	P	F	Q	N	F	F	K	I	T	L	P	L	L	I	K	P	L	T	P	L	M	I	A	S	F	A	F	N	F	N	N	F
Template Known Secondary structure		S	S	S																															S															S							T	T	T	T	T	T																	T
Template Predicted Secondary structure
Template SS confidence
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
		208	.	210	.	.	.	.	.	.										.	.	.	220	.	.	.	.	.	.	.	.	.	230	.			.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.																.	.
Query SS confidence											.	.	.	.	.	.	.	.	.																.	.
Query Sequence		A	G	M	S	F	L	G	L	G	.	.	.	.	.	.	.	.	.	V	T	A	P	T	A	E	W	G	V	M	I	N	D	A	.	.	R	Q	Y	I	W	T	Q	P	L	Q	M	F	W	P	G	L	A	L	F	I	S	V	M	A	F	N	L	V	G	D	A	L	R	D	H	L	D	P	H	L	V	T	E	H
Query Conservation											.	.	.	.	.	.	.	.	.																.	.
Alig confidence											.	.	.	.	.	.	.	.	.																.	.																																.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.
Template Sequence		V	L	I	Q	L	L	T	N	G	G	P	D	R	L	G	T	T	T	P	A	G	Y	T	D	L	L	V	N	Y	T	Y	R	I	A	F	E	G	G	G	G	Q	D	F	G	L	A	A	A	I	A	T	L	I	F	L	L	V	G	A	L	A	I	V	N	L	K	.	.	.	.	.	.	.	A	T	R	M	K	F
Template Known Secondary structure									S	S		S			S	S		S	S	S			S	S										T	T		S	S	S	S		S	S																									.	.	.	.	.	.	.		S	S
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.
Template SS confidence
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.								.	.	510	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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