Job Description P0AFA9 Confidence 99.90% Date Thu Jan 5 11:25:47 GMT 2012 Rank 9 Aligned Residues 220 % Identity 16% Template c2r6gF_ PDB info PDB header:hydrolase/transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: the crystal structure of the e. coli maltose transporter Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.						.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.
Query SS confidence																													.	.	.	.	.
Query Sequence		D	L	P	S	R	L	L	S	P	D	A	Q	H	W	L	G	T	D	H	L	G	R	D	I	F	S	R	.	.	.	.	.	L	M	A	A	T	R	V	S	L	G	S	V	M	A	C	L	L	L	V	L	T	L	G	L	V	I	G	G	S	A	G	L	I	G	G	R	V	D	Q	A	T	M	R	V	A	D	M	F
Query Conservation																													.	.	.	.	.
Alig confidence																													.	.	.	.	.
Template Conservation
Template Sequence		N	W	G	D	E	K	L	S	P	G	Y	T	V	T	T	G	W	K	N	F	T	R	V	F	T	D	E	G	I	Q	K	P	F	L	A	I	F	V	W	T	V	V	F	S	L	I	T	V	F	L	T	V	A	V	G	M	V	L	A	C	L	V	Q	W	E	A	L	R	G	K	A	V	Y	R	V	L	L	I	L	P
Template Known Secondary structure					S				S	S		B			B		T	T	T	T	T	S	G	G	G	T		T	T	T	S	T	T																															T		S	S	S	T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.																									.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	T	F	P	T	S	I	L	S	F	F	M	V	G	V	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	L	T	N	V	I	I	A	I	A	L	S	H	W	A	W	Y	A	R	M	V	R	S	L	V	I	S	L	R	Q	R	E	F	V	L	A	S	R
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	A	V	P	S	F	I	S	I	L	I	F	K	G	L	F	N	Q	S	F	G	E	I	N	M	M	L	S	A	L	F	G	V	K	P	A	W	F	S	D	P	T	T	A	R	T	M	L	I	I	V	N	T	W	L	G	Y	P	Y	M	M	I	L	C	M	G	L	L	K	A	I	P	D	D	L	Y	E	A	S	A
Template Known Secondary structure				S													T		S	S	S	S									T	S	S					T	T	T	S																												G	G	G	S		T
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.										.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.															.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.															.	.
Query Sequence		L	S	G	A	G	H	V	R	V	F	V	D	H	L	A	G	A	V	I	P	S	L	L	V	L	A	T	L	D	I	G	H	M	M	L	H	V	A	G	M	S	F	L	G	L	G	.	.	.	.	.	.	.	.	.	V	T	A	P	T	A	E	W	G	V	M	I	N	D	.	.	A	R	Q	Y	I	W	T	Q	P
Query Conservation																																																.	.	.	.	.	.	.	.	.															.	.
Alig confidence																																																.	.	.	.	.	.	.	.	.															.	.
Template Conservation
Template Sequence		M	D	G	A	G	P	F	Q	N	F	F	K	I	T	L	P	L	L	I	K	P	L	T	P	L	M	I	A	S	F	A	F	N	F	N	N	F	V	L	I	Q	L	L	T	N	G	G	P	D	R	L	G	T	T	T	P	A	G	Y	T	D	L	L	V	N	Y	T	Y	R	I	A	F	E	G	G	G	G	Q	D	F
Template Known Secondary structure			T				S							T	T	G	G	G	T																	T										S	S		S	B		S	S		S	S			B	S	S												T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	M	F	W	P	G	L	A	L	F	I	S	V	M	A	F	N	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	A	A	A	I	A	T	L	I	F	L	L	V	G	A	L	A	I	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions