Job Description P60785 Confidence 99.69% Date Thu Jan 5 12:07:11 GMT 2012 Rank 83 Aligned Residues 155 % Identity 18% Template c3r7wC_ PDB info PDB header:protein transport Chain: C: PDB Molecule:gtp-binding protein gtr1; PDBTitle: crystal structure of gtr1p-gtr2p complex Resolution 2.77 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		F	S	I	I	A	H	I	D	H	G	K	S	T	L	S	D	R	I	I	Q	I	C	G	G	L	S	D	R	E	M	E	A	Q	V	L	D	S	M	D	L	E	R	E	R	G	I	T	I	K	A	Q	S	V	T	L	D	Y	K	A	S	D	G	E	T	Y	Q	L	N	F	I	D	T	P	G	H	V	D	F	.	.
Query Conservation																																																																																.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.																	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Sequence		L	L	L	X	G	R	S	G	S	G	K	S	S	X	R	S	I	I	F	S	N	Y	S	A	F	D	T	R	R	L	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	I	D	V	E	H	S	H	L	R	F	L	.	.	.	.	G	N	X	T	L	N	L	W	D	C	G	G	Q	D	V	F	X	E
Template Known Secondary structure								T	T	S											S				T	T	G	G	G	G				.	.	.	.	.	.	.	.	.	.	.	.	.	.			S									T	.	.	.	.	T	T											S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40															.	.	.	.	.	.	.	.	.	50	.	.					.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
					85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.							.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.									140	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																							.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																																							.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	S	Y	E	V	S	R	S	L	A	A	C	E	G	A	L	L	V	V	D	A	G	Q	G	V	E	A	Q	T	L	A	N	C	Y	T	A	M	E	M	.	.	.	.	.	.	D	L	E	V	V	P	V	L	N	K	I	D	L	P	A	A	D	.	.	.	.	.	.	.	.	P	E	R	V	A	E	E	I
Query Conservation		.	.	.																																							.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Alig confidence		.	.	.																																							.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	Y	F	T	K	Q	K	D	H	I	F	Q	X	V	Q	V	L	I	H	V	F	D	V	E	S	T	E	V	L	K	D	I	E	I	F	A	K	A	L	K	Q	L	R	K	Y	S	P	D	A	K	I	F	V	L	L	H	K	X	D	L	V	Q	L	D	K	R	E	E	L	F	Q	I	X	X	K	N	L	S	E	T
Template Known Secondary structure					T	T	T						T	T										T	T		T	T																				T	T										T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	I	V	G	I	D	A	T	D	A	V	R	C	S	A	K	T	G	V	G	V	Q	D	V	L	E	R	L	V	R	D	I
Query Conservation
Alig confidence																				.
Template Conservation																				.
Template Sequence		S	S	E	F	G	F	P	N	L	I	G	F	P	T	S	I	W	D	.	E	S	L	Y	K	A	W	S	Q	I	V	C	S	L
Template Known Secondary structure				T	T	T			S								T	T	S	.	T												T	T
Template Predicted Secondary structure																				.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions