Job Description P60785 Confidence 100.00% Date Thu Jan 5 12:07:11 GMT 2012 Rank 27 Aligned Residues 228 % Identity 25% Template c3mcaA_ PDB info PDB header:translation regulation/hydrolase Chain: A: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay Resolution 2.74 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	F	S	I	I	A	H	I	D	H	G	K	S	T	L	S	D	R	I	I	Q	I	C	G	G	L	S	D	R	E	M	E	A	Q	V	L	D	S	M	D	L	E	R	E	R	G	I	T	I	K	A	Q	S	V	T	L	D	Y	K	A	S	D	G	E	T	Y	Q	L	N	F	I	D	T	P	G	H	V	D	F	S
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	L	V	V	T	G	H	V	D	S	G	K	S	T	M	L	G	R	I	M	F	E	L	G	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	D	A	P	G	H	R	D	F	I
Template Known Secondary structure									S	S	S	T																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.																																												.	.	.	.	.	210	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.							.
Predicted Secondary structure																																										.															.	.	.																.	.	.	.	.	.
Query SS confidence																																										.															.	.	.																.	.	.	.	.	.
Query Sequence		Y	E	V	S	R	S	L	A	A	C	E	G	A	L	L	V	V	D	A	G	Q	G	V	E	A	Q	T	L	A	N	C	Y	T	A	M	E	M	D	L	E	.	V	V	P	V	L	N	K	I	D	L	P	A	A	D	.	.	.	P	E	R	V	A	E	E	I	E	D	I	V	G	I	D	.	.	.	.	.	.	A
Query Conservation																																										.															.	.	.																.	.	.	.	.	.
Alig confidence																																										.															.	.	.																.	.	.	.	.	.
Template Conservation
Template Sequence		S	G	M	I	A	A	V	L	V	V	D	S	S	Q	N	N	F	E	R	G	F	L	E	N	G	Q	T	R	E	H	A	Y	L	L	R	A	L	G	I	S	E	I	V	V	S	V	N	K	L	D	L	M	S	W	S	E	D	R	F	Q	E	I	K	N	I	V	S	D	F	L	I	K	M	V	G	F	K	T	S	N
Template Known Secondary structure									S									S	S	T	T	S		S		S	S											S	S											G	G	G	G	T	T																	T	T	T	S				G	G	G
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.															.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	D	A	V	R	C	S	A	K	T	G	V	G	V	Q	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	E	R	L	V	R	D	I	P	P	P	E	G	D	P	E	G	P	L	Q	A	L	I	I	D	S	W	F	D	N	Y	L	G	V	V	S	L	I	R	I	K	N	G	T	L	R	K	G	D
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.						.																											.
Template Conservation																																					.																											.
Template Sequence		V	H	F	V	P	I	S	A	I	S	G	T	N	L	I	Q	K	D	S	S	D	L	Y	K	W	Y	K	G	P	T	L	L	S	A	L	.	D	Q	L	V	P	P	E	K	P	Y	R	K	P	L	R	L	S	I	D	D	V	Y	R	S	P	R	.	S	V	T	V	T	G	R	V	E	A	G	N	V	Q	V	N	Q
Template Known Secondary structure									S	S	S		S	S	S		S					G	G	G	G	T			S								.		T	S				S		T	T	T	S													T	T	.											S				T	T
Template Predicted Secondary structure																																					.																											.
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.		.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.		.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	K	V	M	S	T	G	Q	T	Y	N	A	D	R	L	G	I	F	T	P	K	Q	V	D	R	T	E	L	K	C	G	E	V	G	W	L	V	C	A	I	K	D	I	H	G	A	P	V	G	D	T	L	T	L	A	R	N	P
Query Conservation
Alig confidence																		.	.
Template Conservation																		.	.
Template Sequence		V	L	Y	D	V	S	S	Q	E	D	A	Y	V	K	N	V	.	.	I	R	N	S	D	P	S	S	T	W	A	V	A	G	D	T	V	T	L	Q	L	A	D	I	E	V	N	Q	L	R	P	G	D	I	L	S	N	Y	E	N	P
Template Known Secondary structure						T	T	T	T									.	.			S	S	S		S						T	T								S	S	S		G	G	G			T	T						S	S	S
Template Predicted Secondary structure																		.	.
Template SS confidence
		435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450			.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions