Job Description P60785 Confidence 98.77% Date Thu Jan 5 12:07:11 GMT 2012 Rank 272 Aligned Residues 163 % Identity 10% Template c3l2oB_ PDB info PDB header:protein binding/cell cycle Chain: B: PDB Molecule:f-box only protein 4; PDBTitle: structure-based mechanism of dimerization-dependent ubiquitination by2 the scffbx4 ubiquitin ligase Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.				.
Predicted Secondary structure														.																																																																.	.	.
Query SS confidence														.																																																																.	.	.
Query Sequence		K	N	I	R	N	F	S	I	I	A	H	I	.	D	H	G	K	S	T	L	S	D	R	I	I	Q	I	C	G	G	L	S	D	R	E	M	E	A	Q	V	L	D	S	M	D	L	E	R	E	R	G	I	T	I	K	A	Q	S	V	T	L	D	Y	K	A	S	D	G	E	T	Y	Q	L	N	F	I	.	.	.	D
Query Conservation														.																																																																.	.	.
Alig confidence														.																																	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.						.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.												.	.	.	.
Template Sequence		Q	N	E	P	R	F	A	M	F	G	P	G	L	E	E	L	N	T	S	L	V	L	S	L	M	S	S	E	E	L	C	P	T	A	G	L	P	Q	R	Q	I	D	G	I	G	.	.	.	.	.	.	.	.	.	.	.	S	G	V	N	F	Q	L	N	N	Q	H	.	.	.	.	K	F	N	I	L	I	L	Y	S
Template Known Secondary structure												T					S	S	S							T	T		G	G	G							S	T	T	T		S	S	S		.	.	.	.	.	.	.	.	.	.	.								T	T	T		.	.	.	.								S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.												.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.												.	220	.	.	.	.	.	.	.	.	.					230	.	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.				110	.	.	.	.	.	.	.	.	.	120	.	.						.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.														.	.	.	.	.										.
Query SS confidence																																		.	.	.														.	.	.	.	.										.
Query Sequence		T	P	G	H	V	D	F	S	Y	E	V	S	R	S	L	A	A	C	E	G	A	L	L	V	V	D	A	G	Q	G	V	E	.	.	.	A	Q	T	L	A	N	C	Y	T	A	M	E	M	.	.	.	.	.	D	L	E	V	V	P	V	L	N	.	K	I	D	L	P	A	A	D	P	E	R	V	A	E	E	I	E
Query Conservation																																		.	.	.														.	.	.	.	.										.
Alig confidence																																		.	.	.														.	.	.	.	.										.								.	.	.
Template Conservation																																																																								.	.	.
Template Sequence		T	T	R	R	Y	S	V	I	P	Q	I	Q	K	V	C	E	V	V	D	G	F	I	Y	V	A	N	A	E	A	H	K	R	H	E	W	Q	D	E	F	S	H	I	M	A	M	T	D	P	A	F	G	S	S	G	R	P	L	L	V	L	S	C	I	S	Q	G	D	V	K	R	.	.	.	M	P	C	F	Y	L	A
Template Known Secondary structure																				S							B		B	T	T																							T	T										S	S	T	T	S		B	.	.	.
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.				.	310	.	.	.	.	.
		149	150	.	.	.	.	.	.	.					.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure											.	.	.	.
Query SS confidence											.	.	.	.
Query Sequence		D	I	V	G	I	D	A	T	D	.	.	.	.	A	V	R	C	S	A	K	T	G	V	G	V	Q	D	V	L	E	R	L	V	R	D	I	P	P
Query Conservation											.	.	.	.
Alig confidence											.	.	.	.
Template Conservation
Template Sequence		H	E	L	H	L	N	L	L	N	H	P	W	L	V	Q	D	T	E	A	E	T	L	T	G	F	L	N	G	I	E	W	I	L	E	E	V	E	S
Template Known Secondary structure				T	T	G	G	G	G		S									T	T	T		T	T												S
Template Predicted Secondary structure
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions