Job Description P60785 Confidence 100.00% Date Thu Jan 5 12:07:11 GMT 2012 Rank 25 Aligned Residues 252 % Identity 27% Template c3izyP_ PDB info PDB header:rna, ribosomal protein Chain: P: PDB Molecule:translation initiation factor if-2, mitochondrial; PDBTitle: mammalian mitochondrial translation initiation factor 2 Resolution 10.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	N	I	R	N	F	S	I	I	A	H	I	D	H	G	K	S	T	L	S	D	R	I	I	Q	I	C	G	G	L	S	D	R	E	M	E	A	Q	V	L	D	S	M	D	L	E	R	E	R	G	I	T	I	K	A	Q	S	V	T	L	D	Y	K	A	S	D	G	E	T	Y	Q	L	N	F	I	D	T	P	G
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Sequence		I	P	R	S	P	V	V	T	I	M	G	H	V	D	H	G	K	T	T	L	L	D	K	L	R	K	T	Q	V	A	A	M	E	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	T	Q	H	I	G	A	F	L	V	S	L	P	.	.	.	.	S	G	E	K	I	T	F	L	D	T	P	G
Template Known Secondary structure							B						S	T	T	T	T																S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		B				T	T	S			B		S	S	.	.	.	.		S	S			B					S	S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.																.	.	.	.	.	.	.	.	220	.	.	.	.	.					.	.	.	.	230	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		H	V	D	F	S	Y	E	V	S	R	S	L	A	A	C	E	G	A	L	L	V	V	D	A	G	Q	G	V	E	A	Q	T	L	A	N	C	Y	T	A	M	E	M	D	L	E	V	V	P	V	L	N	K	I	D	L	P	A	A	D	P	E	R	V	A	E	E	I	E	D	I	V	G	I	D	A	T	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																																																																														.	.	.	.
Template Conservation
Template Sequence		H	A	A	F	S	A	M	R	A	R	G	T	Q	V	T	D	I	V	I	L	V	V	A	A	D	D	G	V	M	K	Q	T	V	E	S	I	Q	H	A	K	D	A	H	V	P	I	V	L	A	I	N	K	C	D	K	A	E	A	D	P	E	K	V	K	K	E	L	L	A	Y	D	V	V	C	E	D	Y	G	G	D
Template Known Secondary structure		S			T	T	T	S	B	B	S	S	S	B	S	B	S	S						B	S	S	S															T	T	T								B	S	G	G	G	T	T	T	S			S	S	S	S					T	T	S					S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
			157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure		.																												.	.
Query SS confidence		.																												.	.
Query Sequence		.	D	A	V	R	C	S	A	K	T	G	V	G	V	Q	D	V	L	E	R	L	V	R	D	I	P	P	P	.	.	E	G	D	P	E	G	P	L	Q	A	L	I	I	D	S	W	F	D	N	Y	L	G	V	V	S	L	I	R	I	K	N	G	T	L	R	K	G	D	K	V	K	V	M	S	T	G	Q	T	Y	N
Query Conservation		.																												.	.
Alig confidence		.																												.	.
Template Conservation
Template Sequence		V	Q	A	V	H	V	S	A	L	T	G	E	N	M	M	A	L	A	E	A	T	I	A	L	A	E	M	L	E	L	K	A	D	P	T	G	A	V	E	G	T	V	I	E	S	F	T	D	K	G	R	G	P	V	T	T	A	I	I	Q	R	G	T	L	R	K	G	S	I	L	V	A	G	K	S	W	A	K	V	R
Template Known Secondary structure									S	S	S	S		S	S												T	T							S	S	S	S												T	T															S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		A	D	R	L	G	I	F	T	P	K	Q	V	D	R	T	E	L	K	C	G	E	V	G	W	L	V	C	A	I	K	D	I	H	G	A	.	P	V	G	D	T	L	T	L	A	R	N
Query Conservation																																					.
Alig confidence		.	.	.	.																							.	.	.	.						.
Template Conservation		.	.	.	.																							.	.	.	.
Template Sequence		.	.	.	.	L	M	F	D	E	N	G	R	A	V	N	E	A	Y	P	S	M	P	V	G	I	I	.	.	.	.	G	W	R	D	L	P	S	A	G	D	E	I	L	E	V	E	S
Template Known Secondary structure		.	.	.	.										S			S			S	T	T					.	.	.	.	S	S								S	S			S			S
Template Predicted Secondary structure		.	.	.	.																							.	.	.	.
Template SS confidence
						398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.					420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions