Job Description P60785 Confidence 100.00% Date Thu Jan 5 12:07:11 GMT 2012 Rank 34 Aligned Residues 229 % Identity 19% Template c3e3xA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:bipa; PDBTitle: the c-terminal part of bipa protein from vibrio parahaemolyticus rimd2 2210633 Resolution 1.95 Å

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		290	.	.	.	.	.	.	.	.	.	300					.	.	.	.	.	.				.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure													.	.	.	.							.	.	.
Query SS confidence													.	.	.	.							.	.	.
Query Sequence		K	V	K	P	Q	V	Y	A	G	L	F	.	.	.	.	P	V	S	S	D	D	.	.	.	Y	E	A	F	R	D	A	L	G	K	L	S	L	N	D	A	S	L	F	Y	E	P	E	S	S	S	A	L	G	F	G	F	R	C	G	F	L	G	L	L	H	M	E	I	I	Q	E	R	L	E	R	E	Y	D	L	D
Query Conservation													.	.	.	.							.	.	.
Alig confidence													.	.	.	.							.	.	.																											.	.	.																								.
Template Conservation																																																				.	.	.																								.
Template Sequence		V	D	E	P	T	V	T	X	T	F	Q	V	N	T	S	P	F	A	G	E	G	F	V	T	S	R	N	I	L	E	R	L	E	K	E	L	V	H	N	V	A	L	R	V	E	Q	T	D	D	P	.	.	.	D	K	F	R	V	S	G	R	G	E	L	H	L	S	I	L	I	E	N	X	R	R	E	.	G	F	E
Template Known Secondary structure																S	T	T							S																T	T							S	S	T	.	.	.	T							S	S															.	T
Template Predicted Secondary structure																																																				.	.	.																								.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.				.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	T	T	A	P	T	V	V	Y	E	V	E	T	T	S	R	E	V	I	Y	V	D	S	P	S	K	L	P	A	V	N	N	I	Y	E	L	R	E	P	I	A	E	C	H	M	L	L	P	Q	A	Y	L	G	N	V	I	T	L	C	V	E	K	R	G	V	Q	T	N	M	V	Y	H	G	N	Q	V	A	L	T
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Template Sequence		L	A	V	S	R	P	E	V	I	I	E	E	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	X	E	P	F	E	T	V	T	I	D	V	X	E	E	H	Q	G	G	I	X	E	N	I	G	L	R	.	G	E	L	D	X	A	P	D	G	K	G	R	V	R	X	D
Template Known Secondary structure													B	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B														G	G	G												.		B							S	S	S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.																						.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.			.	.	480			.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.				.	.
Query SS confidence																																					.	.				.	.
Query Sequence		Y	E	I	P	M	A	E	V	V	L	D	F	F	D	R	L	K	S	T	S	R	G	Y	A	S	L	D	Y	N	F	K	R	F	Q	A	.	.	S	D	M	.	.	V	R	V	D	V	L	I	N	G	E	R	V	D	A	L	A	L	I	T	H	R	D	N	S	Q	N	R	G	R	E	L	V	E	K	M	K	D	L
Query Conservation																																					.	.				.	.
Alig confidence						.																															.	.				.	.																	.	.
Template Conservation						.																																																						.	.
Template Sequence		F	I	X	P	.	S	R	G	L	I	G	F	Q	T	E	F	X	T	L	T	S	G	S	G	L	L	Y	H	T	F	D	H	Y	G	P	H	G	G	N	I	G	Q	R	V	N	G	V	L	I	A	N	A	A	G	K	A	L	T	.	.	N	A	L	F	N	L	Q	E	R	G	R	L	F	I	G	H	G	V	E	V
Template Known Secondary structure						.					T	T									T	T	T																	S		S										S	S							.	.							T	T	S				S			T	T
Template Predicted Secondary structure						.																																																						.	.
Template SS confidence
		165	.	.	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		519	520	.	.	.	.	.	.	.	.	.	530	.		.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		I	P	R	Q	Q	F	D	I	A	I	Q	A	A	.	I	G	T	H	I	I	A	R	S	T	V	K	Q	L	R	K
Query Conservation															.
Alig confidence															.
Template Conservation
Template Sequence		Y	E	G	X	V	I	G	I	H	S	R	D	N	D	L	T	V	N	A	L	K	A	Q	V	L	T	P	P	I	V
Template Known Secondary structure			T	T							S	S	S	S						S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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