Job Description P60785 Confidence 99.48% Date Thu Jan 5 12:07:11 GMT 2012 Rank 115 Aligned Residues 152 % Identity 13% Template c3dpuA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:rab family protein; PDBTitle: roccor domain tandem of rab family protein (roco) Resolution 2.90 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	I	I	A	H	I	D	H	G	K	S	T	L	S	D	R	I	I	Q	I	C	G	G	L	S	D	R	E	M	E	A	Q	V	L	D	S	M	D	L	E	R	E	R	G	I	T	I	K	A	Q	S	V	T	L	D	Y	K	A	S	D	G	E	T	Y	Q	L	N	F	I	D	T	P	G	H	V	D	F	S	Y
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.
Template Sequence		V	H	L	I	G	D	G	M	A	G	K	T	S	L	L	K	Q	L	I	G	G	L	N	V	V	T	K	Q	A	P	N	I	.	.	.	.	.	.	.	.	.	.	.	K	G	L	E	N	.	.	.	.	.	.	.	.	.	.	D	D	E	L	K	E	C	L	F	H	F	W	D	F	G	G	Q	E	I	M	H	A
Template Known Secondary structure						S	S	S		S	S																			G	G	G	S	.	.	.	.	.	.	.	.	.	.	.	G	G	G	T	T	.	.	.	.	.	.	.	.	.	.		S	T	T	T	T										S			T	T	T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.												.	.	.	490	.											.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	S	R	S	L	A	A	C	E	G	A	L	L	V	V	D	A	G	Q	G	V	E	A	Q	T	L	A	N	C	Y	T	A	M	E	M	D	L	E	V	V	P	V	L	N	K	I	D	L	P	A	A	D	P	E	R	V	A	E	E	I	E	D	I	V	G	I	D	A	T	D	A	V	R	C	S	A	K	T	G
Query Conservation
Alig confidence																																																							.
Template Conservation																																																							.
Template Sequence		S	H	Q	F	F	M	T	R	S	S	V	Y	M	L	L	L	D	S	R	T	D	S	N	K	H	Y	W	L	R	H	I	E	K	Y	G	G	K	S	P	V	I	V	V	M	N	K	I	D	E	N	P	S	Y	.	N	I	E	Q	K	K	I	N	E	R	F	P	A	I	E	N	R	F	H	R	I	S	C	V	E	S
Template Known Secondary structure		T							S	S									G	G	G	G	G	G												S	S	S										T	T	T		T	T		.												G	G	G	T	T									T	T
Template Predicted Secondary structure																																																							.
Template SS confidence
		525	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.		.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	V	Q	D	V	L	E	R	L	V	R	D	I	P
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	I	A	K	S	L	K	S	A	V	L	H	P	D	S
Template Known Secondary structure		.										T		T	T	S
Template Predicted Secondary structure		.
Template SS confidence
			609	610	.	.	.	.	.	.	.	.	.	620	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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