Job Description P60785 Confidence 97.97% Date Thu Jan 5 12:07:11 GMT 2012 Rank 304 Aligned Residues 157 % Identity 17% Template c3dmdA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus Resolution 2.21 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50					.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.													.	.	.	70
Predicted Secondary structure																																														.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	S	I	I	A	H	I	D	H	G	K	S	T	L	S	D	R	I	I	Q	I	C	G	G	L	S	D	R	E	M	E	A	Q	V	L	D	S	M	D	L	E	R	E	R	.	.	.	.	G	I	T	I	K	A	Q	S	V	T	L	D	Y	K	A	S	.	.	.	.	.	.	.	.	.	.	.	.	D	G	E	T
Query Conservation																																														.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	M	F	V	G	F	N	G	S	G	K	T	T	T	I	A	K	L	A	N	W	L	K	N	H	G	F	S	V	V	I	A	A	S	D	T	F	R	A	G	A	I	E	Q	L	E	E	H	A	K	R	I	G	V	K	V	I	K	H	S	Y	G	A	D	P	A	A	V	A	Y	D	A	I	Q	H	A	K	A	R	G
Template Known Secondary structure								T	T	S	S															T	T										T	T															T	T							S	T	T																		T
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		71	.	.	.	.	.	.	.	.	80					.	.	.	.	.	.	.	.	.	90	.	.	.	.	.			.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure												.	.	.	.																.	.
Query SS confidence												.	.	.	.																.	.
Query Sequence		Y	Q	L	N	F	I	D	T	P	G	.	.	.	.	H	V	D	F	S	Y	E	V	S	R	S	L	A	A	C	.	.	E	G	A	L	L	V	V	D	A	G	Q	G	V	E	A	Q	T	L	A	N	C	Y	T	A	M	E	M	D	L	E	V	V	P	V	L	N	K	I	D	L	P	A	A	D	P	E	R	V	A
Query Conservation												.	.	.	.																.	.
Alig confidence												.	.	.	.																.	.													.																				.								.
Template Conservation																																													.																				.								.
Template Sequence		I	D	V	V	L	I	D	T	A	G	R	S	E	T	N	R	N	L	M	D	E	M	K	K	I	A	R	V	T	K	P	N	L	V	I	F	V	G	D	A	L	A	G	.	N	A	I	V	E	Q	A	R	Q	F	N	E	A	V	K	I	D	G	I	.	I	L	T	K	L	D	A	.	D	A	R	G	G	A	A	L
Template Known Secondary structure			S								S	S			S	S	S																S								T	T		T	.	T	T												S						.				S	G	G	G	.		S	S
Template Predicted Secondary structure																																													.																				.								.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.		.	.	.	.	.	280	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	I	E	D	I	V	G	I	D	A	T	D	A	V	R	C	S	A	K	T	G	V	G	V	Q	D	V
Query Conservation
Alig confidence								.	.	.	.									.	.
Template Conservation								.	.	.	.									.	.
Template Sequence		S	I	S	Y	V	I	.	.	.	.	D	A	P	I	L	F	V	G	.	.	V	G	Q	G	Y	D	D	L
Template Known Secondary structure								.	.	.	.	T								.	.		S	S	S	G	G	G
Template Predicted Secondary structure								.	.	.	.									.	.
Template SS confidence
		283	.	.	.	.	.					.	290	.	.	.	.	.	.			.	.	.	300	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions