Job Description P60785 Confidence 100.00% Date Thu Jan 5 12:07:11 GMT 2012 Rank 1 Aligned Residues 545 % Identity 100% Template c3degC_ PDB info PDB header:ribosome Chain: C: PDB Molecule:gtp-binding protein lepa; PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp Resolution NULL Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	N	I	R	N	F	S	I	I	A	H	I	D	H	G	K	S	T	L	S	D	R	I	I	Q	I	C	G	G	L	S	D	R	E	M	E	A	Q	V	L	D	S	M	D	L	E	R	E	R	G	I	T	I	K	A	Q	S	V	T	L	D	Y	K	A	S	D	G	E	T	Y	Q	L	N	F	I	D	T	P	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	K	N	I	R	N	F	S	I	I	A	H	I	D	H	G	K	S	T	L	S	D	R	I	I	Q	I	C	G	G	L	S	D	R	E	M	E	A	Q	V	L	D	S	M	D	L	E	R	E	R	G	I	T	I	K	A	Q	S	V	T	L	D	Y	K	A	S	D	G	E	T	Y	Q	L	N	F	I	D	T	P	G
Template Known Secondary structure			T	T										S	S	S	S	S	S										S	S			S	S				S	S	S			S	S	S							T	S		S	S											T	T	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		H	V	D	F	S	Y	E	V	S	R	S	L	A	A	C	E	G	A	L	L	V	V	D	A	G	Q	G	V	E	A	Q	T	L	A	N	C	Y	T	A	M	E	M	D	L	E	V	V	P	V	L	N	K	I	D	L	P	A	A	D	P	E	R	V	A	E	E	I	E	D	I	V	G	I	D	A	T	D	A	V	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	V	D	F	S	Y	E	V	S	R	S	L	A	A	C	E	G	A	L	L	V	V	D	A	G	Q	G	V	E	A	Q	T	L	A	N	C	Y	T	A	M	E	M	D	L	E	V	V	P	V	L	N	K	I	D	L	P	A	A	D	P	E	R	V	A	E	E	I	E	D	I	V	G	I	D	A	T	D	A	V	R
Template Known Secondary structure			S	T	T									T	T		S								T	T	T				T												T	T										T	T	S	T	T														T					T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		C	S	A	K	T	G	V	G	V	Q	D	V	L	E	R	L	V	R	D	I	P	P	P	E	G	D	P	E	G	P	L	Q	A	L	I	I	D	S	W	F	D	N	Y	L	G	V	V	S	L	I	R	I	K	N	G	T	L	R	K	G	D	K	V	K	V	M	S	T	G	Q	T	Y	N	A	D	R	L	G	I	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	S	A	K	T	G	V	G	V	Q	D	V	L	E	R	L	V	R	D	I	P	P	P	E	G	D	P	E	G	P	L	Q	A	L	I	I	D	S	W	F	D	N	Y	L	G	V	V	S	L	I	R	I	K	N	G	T	L	R	K	G	D	K	V	K	V	M	S	T	G	Q	T	Y	N	A	D	R	L	G	I	F
Template Known Secondary structure				T	T	T		T	T												S							T	T	S		B											T	T	T											S				S	S						T	T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	K	Q	V	D	R	T	E	L	K	C	G	E	V	G	W	L	V	C	A	I	K	D	I	H	G	A	P	V	G	D	T	L	T	L	A	R	N	P	A	E	K	A	L	P	G	F	K	K	V	K	P	Q	V	Y	A	G	L	F	P	V	S	S	D	D	Y	E	A	F	R	D	A	L	G	K	L	S	L	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	P	K	Q	V	D	R	T	E	L	K	C	G	E	V	G	W	L	V	C	A	I	K	D	I	H	G	A	P	V	G	D	T	L	T	L	A	R	N	P	A	E	K	A	L	P	G	F	K	K	V	K	P	Q	V	Y	A	G	L	F	P	V	S	S	D	D	Y	E	A	F	R	D	A	L	G	K	L	S	L	N
Template Known Secondary structure		S	S	S					S				T	T										S	S	T	T	S	S		T	T						S	S	S	B		S	S			T	T							S								S	S	G	G	G													T	T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	S	L	F	Y	E	P	E	S	S	S	A	L	G	F	G	F	R	C	G	F	L	G	L	L	H	M	E	I	I	Q	E	R	L	E	R	E	Y	D	L	D	L	I	T	T	A	P	T	V	V	Y	E	V	E	T	T	S	R	E	V	I	Y	V	D	S	P	S	K	L	P	A	V	N	N	I	Y	E	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	S	L	F	Y	E	P	E	S	S	S	A	L	G	F	G	F	R	C	G	F	L	G	L	L	H	M	E	I	I	Q	E	R	L	E	R	E	Y	D	L	D	L	I	T	T	A	P	T	V	V	Y	E	V	E	T	T	S	R	E	V	I	Y	V	D	S	P	S	K	L	P	A	V	N	N	I	Y	E	L	R
Template Known Secondary structure			S	S									T	T	T									S	S														T	S																		S	S	S						S	S	G	G	G				G	G	G
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure
Query SS confidence
Query Sequence		E	P	I	A	E	C	H	M	L	L	P	Q	A	Y	L	G	N	V	I	T	L	C	V	E	K	R	G	V	Q	T	N	M	V	Y	H	G	N	Q	V	A	L	T	Y	E	I	P	M	A	E	V	V	L	D	F	F	D	R	L	K	S	T	S	R	G	Y	A	S	L	D	Y	N	F	K	R	F	Q	A	S	D	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	P	I	A	E	C	H	M	L	L	P	Q	A	Y	L	G	N	V	I	T	L	C	V	E	K	R	G	V	Q	T	N	M	V	Y	H	G	N	Q	V	A	L	T	Y	E	I	P	M	A	E	V	V	L	D	F	F	D	R	L	K	S	T	S	R	G	Y	A	S	L	D	Y	N	F	K	R	F	Q	A	S	D	M
Template Known Secondary structure													G	G	G											T	T										T	T															T	T	T								T	T	T
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	V	D	V	L	I	N	G	E	R	V	D	A	L	A	L	I	T	H	R	D	N	S	Q	N	R	G	R	E	L	V	E	K	M	K	D	L	I	P	R	Q	Q	F	D	I	A	I	Q	A	A	I	G	T	H	I	I	A	R	S	T	V	K	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	R	V	D	V	L	I	N	G	E	R	V	D	A	L	A	L	I	T	H	R	D	N	S	Q	N	R	G	R	E	L	V	E	K	M	K	D	L	I	P	R	Q	Q	F	D	I	A	I	Q	A	A	I	G	T	H	I	I	A	R	S	T	V	K	Q	L
Template Known Secondary structure									S	S	S	B		G	G	G						G	G	G																S		S		S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.