Job Description P60785 Confidence 99.25% Date Thu Jan 5 12:07:11 GMT 2012 Rank 184 Aligned Residues 162 % Identity 17% Template c3clvA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:rab5 protein, putative; PDBTitle: crystal structure of rab5a from plasmodium falciparum,2 pfb0500c Resolution 1.89 Å

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		1	.	.	.	.	.			.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.				.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure								.	.																																																									.	.	.
Query SS confidence								.	.																																																									.	.	.
Query Sequence		M	K	N	I	R	N	.	.	F	S	I	I	A	H	I	D	H	G	K	S	T	L	S	D	R	I	I	Q	I	C	G	G	L	S	D	R	E	M	E	A	Q	V	L	D	S	M	D	L	E	R	E	R	G	I	T	I	K	A	Q	S	V	T	L	D	.	.	.	Y	K	A	S	D	G	E	T	Y	Q	L	N	F
Query Conservation								.	.																																																									.	.	.
Alig confidence								.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	E	K	K	S	S	Y	K	T	V	L	L	G	E	S	S	V	G	K	S	S	I	V	L	R	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	D	T	F	H	E	N	T	N	T	T	I	G	A	S	F	C	T	Y	V	V	N	L	N	D	N	Y	N	E	N	L	C	N	I	K	F	D	I
Template Known Secondary structure						S	S									T	T	S	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S				S	S						S										T	T					T	T	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.																.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.			.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		I	D	T	P	G	H	V	D	F	S	Y	E	V	S	R	S	L	A	A	C	E	G	A	L	L	V	V	D	A	G	Q	G	V	E	A	Q	T	L	A	N	C	Y	T	.	.	A	M	E	M	D	L	E	V	V	P	V	L	N	K	I	D	L	P	A	A	D	P	E	R	V	A	E	E	I	E	D	I	V	G	I
Query Conservation																																													.	.
Alig confidence																																													.	.
Template Conservation
Template Sequence		W	D	T	A	G	Q	E	R	Y	A	S	I	V	P	L	Y	Y	R	G	A	T	C	A	I	V	V	F	D	I	S	N	S	N	T	L	D	R	A	K	T	W	V	N	Q	L	K	I	S	S	N	Y	I	I	I	L	V	A	N	K	I	D	K	N	F	Q	V	D	I	L	E	V	Q	K	Y	A	Q	D	N	N	L
Template Known Secondary structure					T	T	G	G	G		T	T	T						T	T		S								T	T																			S											T	T					S												T	T
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	T	D	A	V	R	C	S	A	K	T	G	V	G	V	Q	D	V	L	E	R	L	V	R	D	I
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	L	F	I	Q	T	S	A	K	T	G	T	N	I	K	N	I	F	Y	M	L	A	E	E	I
Template Known Secondary structure		.	.	.							T	T	T		T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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