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Job DescriptionP60785
Confidence100.00%DateThu Jan 5 12:07:11 GMT 2012
Rank4Aligned Residues478
% Identity27%Templatec3b8hA_
PDB info PDB header:biosynthetic protein/transferaseChain: A: PDB Molecule:elongation factor 2; PDBTitle: structure of the eef2-exoa(e546a)-nad+ complex
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30...... ...40.........50.........60.........70.........
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Query Sequence  KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREM. . EAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTP
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Template Sequence  TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAGITIKSTAISLYSEMSDEDVKEIKQKT. . . . . . . . DGNSFLINLIDSP
Template Known Secondary structure  GG

GGGTB




B





SS

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SS


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   17..20.........30.........40.........50.........60.........70..... ....80........
 
   80.........90.........100.........110.........120.........130.........140.........150..
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Query Sequence  GHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVG. . . . . . .
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Template Sequence  GHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVN
Template Known Secondary structure  SSTT
T
STTTBS
TT

TS


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   107..110.........120.........130.........140.........150.........160.........170.........180......
 
   153......160.......
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Query Sequence  . . . . . . . . . . . . . . . . . IDATDAVRCSAKTGV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEG
Template Known Secondary structure  S
GGG





GGGT
TTTTTTTTT

SSSS
TTTTS
SB
TTS
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   187..190.........200.........210.........220.........230.........240.........250.........260......
 
   168.170.........180...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GVQDVLERLVRDIPPP.
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Template Sequence  KPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPV
Template Known Secondary structure 
B

BTTT
TTTT



GGGGG

SBS

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   267..270.........280.........290.........300.........310.........320.........330.........340......
 
   184.....190.........200...... ...210.........220.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . EGDPEGPLQALIIDSWFDNYLGV. VSLIRIKNGTLRKGDKVKVMSTG. . . . . . . . .
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Template Sequence  TAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDL
Template Known Secondary structure  BSS
TTSTT
SSSS
BSSTT
STT

TT

SSS
TT
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   347..350.........360.........370.........380.........390.........400.........410.........420......
 
   230.........240.... .....250.........260.........270 .........280.........290. ........300......
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Query Sequence  QTYNADRLGIFTPKQ. VDRTELKCGEVGWLVCAIKDIHGAPV. GDTLTLARNPAEKALPGFKKV. KPQVYAGLFPVSSDD
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Template Sequence  FIKAIQRVVLMMGRFVEPIDDCPAGN. . . . IIGLVGIDQFLLKTGTLTTSETAHN. . MKVMKFSVSPVVQVAVEVKNAND
Template Known Secondary structure 
STTSTT
....S
TTT
SS
S
TT


..BS








SSTTS
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   427..430.........440.........450.. .......460.........470....... ..480.........490.........500
 
   307..310.........320.........330.........340.........350......... 360.........370......
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Query Sequence  YEAFRDALGKLSLNDASLFYEPESSSALGFGFRCGFLGLLHMEIIQERLEREY. DLDLITTAPTVVYEVET. . . . . . . . .
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Template Sequence  LPKLVEGLKRLSKSDPCVLTYMSES. . . . GEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTAL
Template Known Secondary structure 
TT

TT....

SSTTS
S





SS

SS
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   501........510.........520..... ....530.........540.........550.........560.........570......
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation           
 
   

        
                              
   
      
            
Template Sequence  SKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYL
Template Known Secondary structure 
TTS



TTSS
TTS



TT
STTTSS

SS
TTG
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   577..580.........590.........600.........610.........620.........630.........640.........650......
 
   377..380... ......390.... .....400.........410..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TSREVIY. VDSPSKLPAVN. . . . . . . . . . . NIYELREPIAECHMLLPQ
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Template Sequence  HEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIRGGGQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPE
Template Known Secondary structure  GGGS
TTTS

S

SS



S
G
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   657..660.........670.........680.........690.........700.........710.........720.........730......
 
   413......420.........430..... ....440.........450.........460.........470.........480.........490
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Query Sequence  AYLGNVITLCVEKRGVQTNMVYH. . GNQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQASDMVRVDVLINGE
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Template Sequence  QAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNES. FGFTGELRQATGGQAFPQMVFDHWST. . . . . . . . . LGSD
Template Known Secondary structure  GGTTTT

SSSSGGG
.TTTTT

B

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SS
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   738.740.........750.........760.........770....... ..780.........790.........800... ....
 
   491........500.........510.......
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Query Sequence  RVDALALITHRDNSQNRGRELVEKMKD
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Template Conservation 
 
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Template Sequence  PLD. . . . . . . . . . PTSKAGEIVLAARK
Template Known Secondary structure  TT
..........TTS
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   808.810 .........820....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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