Job Description P60785 Confidence 100.00% Date Thu Jan 5 12:07:11 GMT 2012 Rank 26 Aligned Residues 271 % Identity 21% Template c2plfA_ PDB info PDB header:translation Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit; PDBTitle: the structure of aif2gamma subunit from the archaeon2 sulfolobus solfataricus in the nucleotide-free form. Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.													.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	F	S	I	I	A	H	I	D	H	G	K	S	T	L	S	D	R	I	I	Q	I	C	G	G	L	S	D	R	E	M	.	.	.	.	.	.	.	.	.	.	.	.	E	A	Q	V	L	D	S	M	D	L	E	R	E	R	G	I	T	I	K	A	Q	S	V	T	L	D	Y	K	A	S	D	G	E	T	Y	Q	L
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.																																.
Template Conservation																																																																												.
Template Sequence		N	I	G	V	V	G	H	V	D	H	G	K	T	T	L	V	Q	A	I	T	G	I	W	T	S	K	H	S	E	E	L	K	R	G	M	T	I	K	L	G	Y	A	E	T	N	I	G	V	C	E	S	C	K	K	P	E	A	Y	V	T	E	P	S	C	K	S	C	G	S	D	D	E	P	K	.	F	L	R	R	I
Template Known Secondary structure								S	S	T	T	S	S	S	T	T						S	S		S	T	T		T	T	T	T	T	T				S	S												T	T	S		T	T	T	T			S	S	S			G	G	G	T			S				.
Template Predicted Secondary structure																																																																												.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																					.																	.																.
Query SS confidence																																					.																	.																.
Query Sequence		N	F	I	D	T	P	G	H	V	D	F	S	Y	E	V	S	R	S	L	A	A	C	E	G	A	L	L	V	V	D	A	G	Q	G	V	.	E	A	Q	T	L	A	N	C	Y	T	A	M	E	M	D	L	.	E	V	V	P	V	L	N	K	I	D	L	P	A	A	D	.	P	E	R	V	A	E	E	I	E	D	I
Query Conservation																																					.																	.																.
Alig confidence																																					.																	.																.
Template Conservation
Template Sequence		S	F	I	D	A	P	G	H	E	V	L	M	A	T	M	L	S	G	A	A	L	M	D	G	A	I	L	V	V	A	A	N	E	P	F	P	Q	P	Q	T	R	E	H	F	V	A	L	G	I	I	G	V	K	N	L	I	I	V	Q	N	K	V	D	V	V	S	K	E	E	A	L	S	Q	Y	R	Q	I	K	Q	F
Template Known Secondary structure								S	S				S	S	S					T	T	S		S								T	T	S		S	S														T	T			S								G	G	G	S														T	T
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		151				.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.									200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.																																																	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.																																																	.	.	.	.	.	.	.	.
Query Sequence		V	.	.	.	G	I	D	A	T	D	A	V	R	C	S	A	K	T	G	V	G	V	Q	D	V	L	E	R	L	V	R	D	I	P	P	P	E	G	D	P	E	G	P	L	Q	A	L	I	I	D	S	W	.	.	.	.	.	.	.	.	F	D	N	Y	L	G	V	V	S	L	I	R	I	K	N	G	T	L	R	K
Query Conservation			.	.	.																																																	.	.	.	.	.	.	.	.
Alig confidence			.	.	.																																																	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	K	G	T	W	A	E	N	V	P	I	I	P	V	S	A	L	H	K	I	N	I	D	S	L	I	E	G	I	E	E	Y	I	K	T	P	Y	R	D	L	S	Q	K	P	V	M	L	V	I	R	S	F	D	V	N	K	P	G	T	Q	F	N	E	L	K	G	G	V	I	G	G	S	I	I	Q	G	L	F	K	V
Template Known Secondary structure		S	T	T	S	G	G	G	G							B	T	T	T	T	B	S												S							T	T	S															T	T			G	G	G													S				T
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.													.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.				.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Query Sequence		G	D	K	V	K	V	M	S	T	G	Q	T	.	.	.	.	.	.	.	.	.	.	.	.	Y	N	A	D	R	L	G	I	F	T	P	K	Q	V	D	R	T	E	L	K	C	G	E	V	G	W	L	V	C	A	.	.	.	I	K	D	I	H	G	A	P	V	G	D	T	L	T	L	A	R	N	P
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.									.	.	.																				.	.	.
Template Conservation																																		.	.	.
Template Sequence		D	Q	E	I	K	V	L	P	G	L	R	V	E	K	Q	G	K	V	S	Y	E	P	I	F	T	K	I	S	S	I	R	F	.	.	.	G	D	E	E	F	K	E	A	K	P	G	G	L	V	A	I	G	T	Y	L	D	P	S	L	T	K	A	D	N	L	L	G	S	I	I	T	L	A	D	A	E
Template Known Secondary structure		T													G	G	G	S																.	.	.	T	T				S				T	T	S							S	S		G	G	G	T	T	T	T	T	T	T	T						T	T
Template Predicted Secondary structure																																		.	.	.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.				.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions