Job Description P60785 Confidence 99.08% Date Thu Jan 5 12:07:11 GMT 2012 Rank 231 Aligned Residues 156 % Identity 19% Template c1zbdA_ PDB info PDB header:g protein Chain: A: PDB Molecule:rabphilin-3a; PDBTitle: structural basis of rab effector specificity: crystal2 structure of the small g protein rab3a complexed with the3 effector domain of rabphilin-3a Resolution 2.60 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	F	S	I	I	A	H	I	D	H	G	K	S	T	L	S	D	R	I	I	Q	I	C	G	G	L	S	D	R	E	M	E	A	Q	V	L	D	S	M	D	L	E	R	E	R	G	I	T	I	K	A	Q	S	V	T	L	D	Y	K	A	S	D	G	E	T	Y	Q	L	N	F	I	D	T	P	G	H	V	D	F	S
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	L	I	I	G	N	S	S	V	G	K	T	S	F	L	F	R	Y	A	D	D	S	F	T	P	A	F	V	S	T	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	F	K	V	K	T	I	Y	R	N	D	K	R	I	K	L	Q	I	W	D	T	A	G	L	E	R	Y	R
Template Known Secondary structure								S	T	T	S	S										T					S							S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T													S	G	G	G
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.																			.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.					.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																									.	.	.	.
Query SS confidence																																									.	.	.	.
Query Sequence		Y	E	V	S	R	S	L	A	A	C	E	G	A	L	L	V	V	D	A	G	Q	G	V	E	A	Q	T	L	A	N	C	Y	T	A	M	E	M	D	L	.	.	.	.	E	V	V	P	V	L	N	K	I	D	L	P	A	A	D	P	E	R	V	A	E	E	I	E	D	I	V	G	I	D	A	T	D	A	V	R	C
Query Conservation																																									.	.	.	.
Alig confidence																																									.	.	.	.																			.
Template Conservation																																																															.
Template Sequence		T	I	T	T	A	Y	Y	R	G	A	X	G	F	I	L	X	Y	D	I	T	N	E	E	S	F	N	A	V	Q	D	W	S	T	Q	I	K	T	Y	S	W	D	N	A	Q	V	L	L	V	G	N	K	C	D	X	E	D	E	R	V	V	S	.	S	E	R	G	R	Q	L	A	D	H	L	G	F	E	F	F	E	A
Template Known Secondary structure						T	T	G	G	G		S								T	T																			S		S	S										T	T		T	T	S			S		.												T
Template Predicted Secondary structure																																																															.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	K	T	G	V	G	V	Q	D	V	L	E	R	L	V	R	D	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	A	K	D	N	I	N	V	K	Q	T	F	E	R	L	V	D	V	I
Template Known Secondary structure		B	T	T	T	T	B	S	S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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