Job Description P60785 Confidence 100.00% Date Thu Jan 5 12:07:11 GMT 2012 Rank 30 Aligned Residues 242 % Identity 26% Template c1r5nA_ PDB info PDB header:translation Chain: A: PDB Molecule:eukaryotic peptide chain release factor gtp- PDBTitle: crystal structure analysis of sup35 complexed with gdp Resolution 2.90 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	F	S	I	I	A	H	I	D	H	G	K	S	T	L	S	D	R	I	I	Q	I	C	G	G	L	S	D	R	E	M	E	A	Q	V	L	D	S	M	D	L	E	R	E	R	G	I	T	I	K	A	Q	S	V	T	L	D	Y	K	A	S	D	G	E	T	Y	Q	L	N	F	I	D	T	P	G	H	V	D	F	S
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.															.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.															.	.
Template Sequence		N	I	V	F	I	G	H	V	D	A	G	K	S	T	L	G	G	N	I	L	F	L	T	G	M	V	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	R	T	M	E	K	I	E	R	E	A	K	R	A	Y	F	E	T	E	.	.	.	.	.	H	R	R	F	S	L	L	D	A	P	G	A	S	Q	.	.
Template Known Secondary structure									T	T	S	S												T	T	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.																		S	.	.	.	.	.	S											T	T	S	.	.
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.															.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.														.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.						.	.	.	.	290	.	.	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.								.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.						140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																								.	.	.	.	.	.	.																			.															.	.	.	.	.													.
Query SS confidence																								.	.	.	.	.	.	.																			.															.	.	.	.	.													.
Query Sequence		Y	E	V	S	R	S	L	A	A	C	E	G	A	L	L	V	V	D	A	G	Q	G	.	.	.	.	.	.	.	V	E	A	Q	T	L	A	N	C	Y	T	A	M	E	M	D	L	E	.	V	V	P	V	L	N	K	I	D	L	P	A	A	D	.	.	.	.	.	P	E	R	V	A	E	E	I	E	D	I	V	.
Query Conservation																								.	.	.	.	.	.	.																			.															.	.	.	.	.													.
Alig confidence		.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.																			.															.	.	.	.	.													.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	A	D	I	G	V	L	V	I	S	A	R	R	G	E	F	E	A	G	F	E	R	G	G	Q	T	R	E	H	A	V	L	A	R	T	Q	G	I	N	H	L	V	V	V	I	N	K	M	D	E	P	S	V	Q	W	S	E	E	R	Y	K	E	C	V	D	K	L	S	M	F	L	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.		S									S	T	T					T	T	S	S	S													T	T		S	S								S	S	S	T	T		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
								152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.														.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure		.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	G	I	D	A	T	D	A	V	R	C	S	A	K	T	G	V	G	V	Q	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	R	L	V	R	D	I	P	P	P	E	G	D	P	E	G	P	L	Q	A	L	I	I	D	S	W	F	D	N	Y	L	G	V	V	S	L	I	R	I
Query Conservation		.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation																																																																					.	.
Template Sequence		R	V	A	G	Y	N	S	K	T	D	V	K	Y	M	P	V	S	A	Y	T	G	Q	N	V	K	D	R	V	D	S	S	V	C	P	W	Y	Q	G	P	S	L	L	E	Y	L	D	S	M	T	H	L	E	R	K	V	N	A	P	F	I	M	P	I	A	S	K	Y	.	.	K	D	L	G	T	I	L	E	G	K	I
Template Known Secondary structure								T	T	T	T							B	T	T	T	T	B	T	T	S	S				T	T	T		T	T			S																		T	S											.	.		S	S	S
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.			.	.	480	.	.	.	.	.	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	G	T	L	R	K	G	D	K	V	K	V	M	S	T	G	Q	T	Y	N	A	D	R	L	G	I	F	T	P	K	Q	V	D	R	T	E	L	K	C	G	E	V	G	W	L	V	C	A	I	K	D	I	H	G	A	P	V	G	D	T	L	T	L	A	R	N	P	A
Query Conservation
Alig confidence																											.	.																					.
Template Conservation																											.	.																					.
Template Sequence		E	A	G	S	I	K	K	N	S	N	V	L	V	M	P	I	N	Q	T	L	E	V	T	A	I	.	.	Y	D	E	A	D	E	E	I	S	S	S	I	C	G	D	Q	V	R	L	R	.	V	R	G	D	D	S	D	V	Q	T	G	Y	V	L	T	S	T	K	N	P	V
Template Known Secondary structure			B	S				S	S							T	T	T									.	.			T	T					S				T	T							.			S			S	S			T	T						S	S	S
Template Predicted Secondary structure																											.	.																					.
Template SS confidence
		489	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.			.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.		.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions