Job Description P0ACB7 Confidence 99.92% Date Thu Jan 5 11:17:50 GMT 2012 Rank 13 Aligned Residues 261 % Identity 12% Template c3mkrA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:coatomer subunit epsilon; PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat Resolution 2.60 Å

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		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	A	A	E	A	A	Q	Q	R	G	D	E	A	R	A	N	Q	H	L	E	R	A	A	E	L	A	G	N	D	T	I	P	V	E	I	T	R	V	R	L	Q	L	A	R	N	E	N	H	A	A	R	H	G	V	D	K	L	L	E	V	T	P	R	H	P	E	V	L	R	L	A	E	Q	A	Y	I	R	T	G
Query Conservation
Alig confidence																																																													.	.	.
Template Conservation																																																													.	.	.
Template Sequence		L	F	D	V	K	N	A	F	Y	I	G	S	Y	Q	Q	C	I	N	E	A	Q	R	V	K	P	S	S	P	E	R	D	V	E	R	D	V	F	L	Y	R	A	Y	L	A	Q	R	K	Y	G	V	V	L	D	E	I	K	P	S	S	.	.	.	A	P	E	L	Q	A	V	R	M	F	A	E	Y	L	A	S	H	S
Template Known Secondary structure		T									T	T												S				S																		T	T									S		T	T	S	.	.	.																	S	T
Template Predicted Secondary structure																																																													.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.				.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	S	S	L	L	D	I	I	P	S	M	A	K	A	H	V	G	D	E	E	H	R	A	M	L	E	Q	Q	A	W	I	G	L	M	D	Q	A	R	A	D	N	G	S	E	G	L	R	N	W	W	K	N	Q	S	R	K	T	R	H	Q	V	A	L	Q	V	A	M	A	E	H	L	I	E	C	D	D	H	D	T
Query Conservation
Alig confidence																							.	.	.	.	.	.																											.	.	.	.	.
Template Conservation																							.	.	.	.	.	.																											.	.	.	.	.
Template Sequence		R	R	D	A	I	V	A	E	L	D	R	E	M	S	R	S	V	D	V	T	N	.	.	.	.	.	.	T	T	F	L	L	M	A	A	S	I	Y	F	Y	D	Q	N	P	D	A	A	L	R	T	L	H	Q	.	.	.	.	.	G	D	S	L	E	C	M	A	M	T	V	Q	I	L	L	K	L	D	R	L	D	L
Template Known Secondary structure		T														S					S		.	.	.	.	.	.														T	T										T	T	.	.	.	.	.			S														T	T
Template Predicted Secondary structure																							.	.	.	.	.	.																											.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.							.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.						.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.						.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.
Query SS confidence																	.	.	.	.	.
Query Sequence		A	Q	Q	I	I	I	D	G	L	K	R	Q	Y	D	D	.	.	.	.	.	R	L	L	L	P	I	P	R	L	K	T	N	N	P	E	Q	L	E	K	V	L	R	Q	Q	I	K	N	V	G	D	R	P	L	L	W	S	T	L	G	Q	S	L	M	K	H	G	E	W	Q	E	A	S	L	A	F	R	A	A	L	K
Query Conservation																	.	.	.	.	.
Alig confidence																	.	.	.	.	.
Template Conservation
Template Sequence		A	R	K	E	L	K	K	M	Q	D	Q	D	E	D	A	T	L	T	Q	L	A	T	A	W	V	S	L	A	A	G	G	E	K	L	Q	D	A	Y	Y	I	F	Q	E	M	A	D	K	C	S	P	T	L	L	L	L	N	G	Q	A	A	C	H	M	A	Q	G	R	W	E	A	A	E	G	V	L	Q	E	A	L	D
Template Known Secondary structure														T	T																	T	T																S																	T	T
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		357	.	.		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		Q	R	P	.	D	A	Y	D	Y	A	W	L	A	D	A	L	D	R	L	H	K	P	E	E	A	A	A	M	R	R	D	G	L	M	L	T	L	Q	N	N	P
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence		K	D	S	G	H	P	E	T	L	I	N	L	V	V	L	S	Q	H	L	G	K	P	P	E	V	T	N	R	Y	L	S	Q	L	K	D	A	H	R	S	H	P
Template Known Secondary structure				T	T															T	T																		T	T
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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