Job Description P0ACB7 Confidence 98.73% Date Thu Jan 5 11:17:50 GMT 2012 Rank 99 Aligned Residues 312 % Identity 13% Template c2xm6A_ PDB info PDB header:unknown function Chain: A: PDB Molecule:protein corresponding to locus c5321 from cft073 e.coli PDBTitle: crystal structure of the protein corresponding to locus c5321 from2 cft073 e.coli strain Resolution 1.68 Å

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		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.					.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130					.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																											.	.	.	.																																			.	.	.	.
Query SS confidence																											.	.	.	.																																			.	.	.	.
Query Sequence		T	R	G	W	F	V	G	R	K	R	R	R	A	R	K	Q	T	E	Q	A	L	L	K	L	A	.	.	.	.	E	G	D	Y	Q	Q	V	E	K	L	M	A	K	N	A	D	H	A	E	Q	P	V	V	N	Y	L	L	A	A	E	A	A	Q	Q	.	.	.	.	R	G	D	E	A	R	A	N	Q	H	L	E	R
Query Conservation																											.	.	.	.																																			.	.	.	.
Alig confidence																											.	.	.	.																			.	.															.	.	.	.
Template Conservation																																																	.	.
Template Sequence		L	E	Q	L	K	Q	K	A	E	S	G	E	A	K	A	Q	L	E	L	G	Y	R	Y	F	Q	G	N	E	T	T	K	D	L	T	Q	A	M	D	W	F	R	R	A	A	E	Q	G	.	.	Y	T	P	A	E	Y	V	L	G	L	R	Y	M	N	G	E	G	V	P	Q	D	Y	A	Q	A	V	I	W	Y	K	K
Template Known Secondary structure											T	T															T	S	S	S																	T	T	.	.															T	S	S	S
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	E	L	A	G	N	D	T	I	P	V	E	I	T	R	V	R	L	Q	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.
Template Sequence		A	A	L	K	G	L	.	.	.	P	Q	A	Q	Q	N	L	G	V	M	Y	H	E	G	N	G	V	K	V	D	K	A	E	S	V	K	W	F	R	L	A	A	E	Q	G	R	D	S	G	Q	Q	S	M	G	D	A	Y	F	E	G	D	G	V	T	R	D	Y	V	M	A	R	E	W	Y	S	K	A	A	E	Q	G
Template Known Secondary structure					T	T		.	.	.														T	S	S	S																	T	T															T	S	S	S																	T	T
Template Predicted Secondary structure								.	.	.
Template SS confidence
		82	.	.	.	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
																				166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	N	E	N	H	A	A	R	H	G	V	D	K	L	L	E	V	T	P	R	H	P	E	V	L	R	L	A	E	Q	A	Y	I	R	T	G	A	W	S	S	L	L	D	I	I	P	S	M	A	K	A	H	V	G	D	E	E	H	R	A	M	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	V	W	S	C	N	Q	L	G	Y	M	Y	S	R	G	L	G	V	E	R	N	D	A	I	S	A	Q	W	Y	R	K	S	A	T	S	G	D	E	L	G	Q	L	H	L	A	D	M	Y	Y	F	G	I	G	V	T	Q	D	Y	T	Q	S	R	V	L	F	S	Q	S	A	E	Q	G	N	S	I	A	Q	F	R	L
Template Known Secondary structure																T	S	S	S																	T	T															T	S	S	S																T	T	T
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	Q	A	W	I	G	L	M	D	Q	A	R	A	D	N	G	S	E	G	L	R	N	W	W	K	N	Q	S	R	K	T	R	H	Q	V	A	L	Q	V	A	M	A	E	H	L	I	E	C	D	D	H	D	T	A	Q	Q	I	I	I	D	G	L	K	R	Q	Y	D	D	R	L	L	L	P	I	P	R	L	K	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Y	I	L	E	Q	G	L	A	G	A	K	E	P	L	K	A	L	E	W	Y	R	K	S	A	E	Q	G	N	S	D	G	Q	Y	Y	L	A	H	L	Y	D	K	G	A	E	G	V	A	K	N	R	E	Q	A	I	S	W	Y	T	K	S	A	E	Q	G	D	A	T	A	Q	A	N	L	G	A	I	Y	F	R	L
Template Known Secondary structure								T	T	T	S	S															T	T	T																B	T	T	B																	T	T															S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340					.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.					.	.	.	.	.
Predicted Secondary structure																.																				.	.	.	.																																		.	.	.	.
Query SS confidence																.																				.	.	.	.																																		.	.	.	.
Query Sequence		N	N	P	E	Q	L	E	K	V	L	R	Q	Q	I	.	K	N	V	G	D	R	P	L	L	W	S	T	L	G	Q	S	L	M	K	.	.	.	.	H	G	E	W	Q	E	A	S	L	A	F	R	A	A	L	K	Q	R	P	D	A	Y	D	Y	A	W	L	A	D	A	L	D	R	.	.	.	.	L	H	K	P	E
Query Conservation																.																				.	.	.	.																																		.	.	.	.
Alig confidence																.																				.	.	.	.																			.															.	.	.	.
Template Conservation																																																										.
Template Sequence		G	S	E	E	E	H	K	K	A	V	E	W	F	R	K	A	A	A	K	G	E	K	A	A	Q	F	N	L	G	N	A	L	L	Q	G	K	G	V	K	K	D	E	Q	Q	A	A	I	W	M	R	K	A	A	E	Q	G	.	L	S	A	A	Q	V	Q	L	G	E	I	Y	Y	Y	G	L	G	V	E	R	D	Y	V
Template Known Secondary structure																				T	T															T	S	S	S																	T	T	.															T	S	S	S
Template Predicted Secondary structure																																																										.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.		.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
		379	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	A	A	M	R	R	D	G	L	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	A	W	A	W	F	D	T	A	S	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions