Job Description P37013 Confidence 98.30% Date Thu Jan 5 11:54:23 GMT 2012 Rank 134 Aligned Residues 218 % Identity 8% Template c3te6A_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:regulatory protein sir3; PDBTitle: crystal structure of the s. cerevisiae sir3 aaa+ domain Resolution 2.80 Å

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		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.						.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.						250	.	.
Predicted Secondary structure																						.	.																												.	.	.	.	.																			.	.	.	.	.
Query SS confidence																						.	.																												.	.	.	.	.																			.	.	.	.	.
Query Sequence		T	Q	M	I	G	L	S	P	G	M	T	Q	L	K	K	E	I	E	I	V	.	.	A	A	S	D	L	N	V	L	I	S	G	E	T	G	T	G	K	E	L	V	A	K	A	I	H	E	A	.	.	.	.	.	S	P	R	A	V	N	P	L	V	Y	L	N	C	A	A	L	P	E	.	.	.	.	.	S	V	A
Query Conservation																						.	.																												.	.	.	.	.																			.	.	.	.	.
Alig confidence																						.	.																												.	.	.	.	.																			.	.	.	.	.
Template Conservation
Template Sequence		E	L	L	K	S	Q	V	E	D	F	T	R	I	F	L	P	I	Y	D	S	L	X	S	S	Q	N	K	L	F	Y	I	T	N	A	D	D	S	T	K	F	Q	L	V	N	D	V	X	D	E	L	I	T	S	S	A	R	K	E	L	P	I	F	D	Y	I	H	I	D	A	L	E	L	X	D	A	L	Y	E	K	I
Template Known Secondary structure																								T	T												S																	T	T	T	T	T	S	S										T	T
Template Predicted Secondary structure
Template SS confidence
		547	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.			.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.										.
Query SS confidence																																.	.										.
Query Sequence		E	S	E	L	F	G	H	V	K	G	A	F	T	G	A	I	S	N	R	S	G	K	F	E	M	A	D	N	G	T	.	.	L	F	L	D	E	I	G	E	L	.	S	L	A	L	Q	A	K	L	L	R	V	L	Q	Y	G	D	I	Q	R	V	G	D	D	R	C	L	R	V	D	V	R	V	L	A	A	T	N	R
Query Conservation																																.	.										.
Alig confidence																																.	.										.															.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	F	A	I	S	K	E	N	G	D	I	S	L	E	A	L	N	F	Y	I	T	N	V	P	K	A	K	K	R	K	T	L	I	L	I	Q	N	P	E	N	L	L	S	E	K	I	L	Q	Y	F	E	K	W	I	S	S	.	.	.	.	.	.	.	.	.	.	.	K	N	S	K	L	S	I	I	C	V	G	G	H
Template Known Secondary structure						S																		S		G	G	G	S											S	S	S			T													.	.	.	.	.	.	.	.	.	.	.	S	S											S
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		629	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.												.	.	.	.	.	690	.	.	.	.	.	.	.
			330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.																					.	.	.	.	.
Predicted Secondary structure		.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	D	L	R	E	E	V	L	A	G	R	F	R	A	D	L	F	H	R	L	S	V	F	P	L	S	V	P	P	L	R	E	R	G	D	D	V	I	L	L	A	G	Y	F	C	E	Q	C	R	L	R	Q	G	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	V	L	S
Query Conservation		.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.							.	.	.	.																					.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.																					.	.
Template Sequence		N	V	T	I	R	E	Q	.	.	.	.	I	N	I	X	P	S	L	K	A	H	F	T	E	I	K	L	N	K	V	D	.	.	K	N	E	L	Q	Q	X	I	I	T	R	L	K	S	L	L	K	P	F	H	V	K	V	N	D	K	K	E	X	T	I	Y	N	N	I	P	D	N	V	I	V	I	N	H	K	I	N
Template Known Secondary structure		S							.	.	.	.			T						T	T											.	.																									T	T											T	T
Template Predicted Secondary structure									.	.	.	.																					.	.
Template SS confidence
		700	.	.	.	.	.	.					.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.			.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.
		389	390	.	.	.	.	.	.	.			.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		A	G	A	R	N	L	L	Q	H	.	.	Y	S	F	P	G	N	V	R	E	L	E	H	A	I	H	R	A	V	V	L	A	R
Query Conservation											.	.
Alig confidence											.	.
Template Conservation
Template Sequence		N	K	I	T	Q	L	I	A	K	N	V	A	N	V	S	G	S	T	E	K	A	F	K	I	C	E	A	A	V	E	I	S	K
Template Known Secondary structure																		S
Template Predicted Secondary structure
Template SS confidence
		782	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions