Job Description P37013 Confidence 94.19% Date Thu Jan 5 11:54:23 GMT 2012 Rank 206 Aligned Residues 152 % Identity 10% Template c3qp1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:cvir transcriptional regulator; PDBTitle: crystal structure of cvir ligand-binding domain bound to the native2 ligand c6-hsl Resolution 1.55 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.				.	.	.	.	.	.	60	.	.	.	.	.	.				.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.								.	.	.														.	.	.
Query SS confidence																																										.	.	.								.	.	.														.	.	.
Query Sequence		V	L	A	N	I	A	I	E	L	Q	R	G	I	G	H	Q	D	R	F	Q	R	L	I	T	T	L	R	Q	V	L	E	C	D	A	S	A	L	L	R	Y	.	.	.	D	S	R	Q	F	I	P	.	.	.	L	A	I	D	G	L	A	K	D	V	L	G	R	.	.	.	R	F	A	L	E	G	H	P	R	L	E
Query Conservation																																										.	.	.								.	.	.														.	.	.
Alig confidence																				.																						.	.	.								.	.	.														.	.	.
Template Conservation																				.
Template Sequence		T	L	L	E	W	I	H	M	A	G	H	I	E	T	E	N	E	L	.	K	A	F	L	D	Q	V	L	S	Q	A	P	S	E	R	L	L	L	A	L	G	R	L	N	N	Q	N	Q	I	Q	R	L	E	R	V	L	N	V	S	Y	P	S	D	W	L	D	Q	Y	M	K	E	N	Y	A	Q	H	D	P	I	L	R
Template Known Secondary structure											T	T			S					.									T	T	S	S		S											T	T	S											S	S	S											T	T	G	G	G	T		G	G	G	G
Template Predicted Secondary structure																				.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		A	I	A	R	A	G	D	V	V	R	F	P	A	D	S	E	L	P	D	.	P	Y	D	G	L	I	P	G	Q	E	S	L	K	V	H	A	C	V	G	L	P	L	F	A	G	Q	N	L	I	G	A	L	T	L	D	G	M	Q	P	D	Q	F	D	V	F	S	D	E	E	L	R	L	I	A	A	L	A	A	G	A
Query Conservation																					.
Alig confidence																					.
Template Conservation
Template Sequence		I	H	L	G	Q	G	P	V	M	W	E	E	R	F	N	R	A	K	G	A	E	E	K	R	F	I	A	E	A	T	Q	N	G	M	G	S	G	I	T	F	S	A	A	S	E	R	N	N	I	G	S	I	L	S	I	A	G	R	E	P	G	R	N	A	A	L	V	A	M	L	N	C	L	T	P	H	L	H	Q	A
Template Known Secondary structure		S		T	T	S											T			S													T	T		S	S									T	T	T	T									S	S	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		157	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		182	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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