Job Description P37013 Confidence 99.85% Date Thu Jan 5 11:54:23 GMT 2012 Rank 8 Aligned Residues 256 % Identity 16% Template c3pfiB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:holliday junction atp-dependent dna helicase ruvb; PDBTitle: 2.7 angstrom resolution crystal structure of a probable holliday2 junction dna helicase (ruvb) from campylobacter jejuni subsp. jejuni3 nctc 11168 in complex with adenosine-5'-diphosphate Resolution 2.69 Å

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		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.				.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.
Query SS confidence																								.	.	.
Query Sequence		K	Q	T	Q	M	I	G	L	S	P	G	M	T	Q	L	K	K	E	I	E	I	V	.	.	.	A	A	S	D	L	N	V	L	I	S	G	E	T	G	T	G	K	E	L	V	A	K	A	I	H	E	A	S	P	R	A	V	N	P	L	V	Y	L	N	C	A	A	L	P	E	S	V	A	E	S	E	L	F	G	H
Query Conservation																								.	.	.
Alig confidence																								.	.	.																												.	.	.																								.	.
Template Conservation																																																						.	.	.																								.	.
Template Sequence		N	F	D	G	Y	I	G	Q	E	S	I	K	K	N	L	N	V	F	I	A	A	A	K	K	R	N	E	C	L	D	H	I	L	F	S	G	P	A	G	L	G	K	T	T	L	A	N	I	I	S	Y	E	.	.	.	X	S	A	N	I	K	T	T	A	A	P	X	I	E	K	S	G	D	L	A	A	I	L	.	.
Template Known Secondary structure			S	T	T			S																		T	T										S	S	T	T	S	S												.	.	.	T	T								G	G	G			S	S								.	.
Template Predicted Secondary structure																																																						.	.	.																								.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.				.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	G	A	F	T	G	A	I	S	N	R	S	G	K	F	E	M	A	D	N	G	T	L	F	L	D	E	I	G	E	L	S	L	A	L	Q	A	K	L	L	R	V	L	Q	Y	G	D	I	Q	R	V	G	D	D	R	C	L	R	V	D	V	R	V	L	A	A	T	N	R	D	L	R	E	E	V	L	A	G	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	N	L	S	E	G	D	I	L	F	I	D	E	I	H	R	L	S	P	A	I	E	E	V	L	Y	P	A	X	E	D	Y	P	.	.	.	.	.	.	.	.	.	.	.	.	K	F	T	L	I	G	A	T	T	R	A	G	X	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T			T	T							S	G	G	G															T			.	.	.	.	.	.	.	.	.	.	.	.									S		G	G	G	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template SS confidence
																	99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.													.	.	.	.	.	.	.	.	140	.	.	.	.
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		F	R	A	D	L	F	H	R	L	S	V	F	P	L	S	V	P	P	L	R	E	R	G	D	D	V	I	L	L	A	G	Y	F	C	E	Q	C	R	L	R	Q	G	L	S	R	V	V	L	S	A	G	A	R	N	L	L	Q	H	Y	S	F	P	G	N	V	R	E	L	E	H	A	I	H	R	A	V	V	L	A	.
Query Conservation																																																																																	.
Alig confidence																				.	.	.																.	.	.	.	.	.	.																	.																				.
Template Conservation																				.	.	.																.	.	.	.	.	.	.																	.
Template Sequence		L	S	N	P	L	R	D	R	F	G	X	Q	F	R	L	E	F	Y	.	.	.	K	D	S	E	L	A	L	I	L	Q	K	A	A	L	K	.	.	.	.	.	.	.	L	N	K	T	C	E	E	K	A	A	L	E	I	A	K	R	.	S	R	S	T	P	R	I	A	L	R	L	L	K	R	V	R	D	F	A	D
Template Known Secondary structure		S						T	T		S									.	.	.																.	.	.	.	.	.	.	T	T															.	T	T	T
Template Predicted Secondary structure																				.	.	.																.	.	.	.	.	.	.																	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.				.	.	.	.	.	.	.	.	190	.	.	.	.	.	.								.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
				419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	R	A	T	R	S	G	D	E	V	I	L	E	A	Q	H	F	A	F	P	E	V	T	L	P	T	P	E	V	A	A	V	P	V	V	K	Q	N	L	R	E	A	T	E	A	F	Q	R	E	T	I	R	Q	A	L	A	Q	N	H	H	N	W	A	A	C	A	R	M	L	E	T	D	V	A	N	L	H	R	L
Query Conservation		.	.
Alig confidence		.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	N	D	E	E	I	I	T	E	K	R	A	N	E	A	L	N	S	L	G	V	N	E	L	G	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	X	D	L	R	Y	L	E	L	L	T	A	A	K	Q	K	P	I	G	L	A	S	I	A	A	A	L	S	E	D	E	N	T	I	E	D	V
Template Known Secondary structure			T	T		S															T			T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T	T			B									T	T									T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.																	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		497	.	.	500	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	R	L	G	L	K	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	E	P	Y	L	L	A	N
Template Known Secondary structure		T							T
Template Predicted Secondary structure
Template SS confidence
		297	.	.	300	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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