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Job DescriptionP37013
Confidence99.63%DateThu Jan 5 11:54:23 GMT 2012
Rank30Aligned Residues229
% Identity16%Templatec3hteC_
PDB info PDB header:motor proteinChain: C: PDB Molecule:atp-dependent clp protease atp-binding subunit clpx; PDBTitle: crystal structure of nucleotide-free hexameric clpx
Resolution4.03 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   185....190.........200.. .......210.........220.........230.........240......... 250.........
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Query Sequence  TQMIGLSPGMTQLKKEIE. . . . IVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPE. SVAESELFGH
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Template Sequence  DYVIGQEQAKKVLAVAVYNHYKRLRNGKSNILLIGPTGSGKTLLAETLARLL. . . DVPFTMADATTLEDVENIIQKLLQK
Template Known Secondary structure  TTS
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TTSSTT...T

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TTTT
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   76...80.........90.........100.........110.........120....... ..130.........140.........150..
 
   260.........270.........280.........290. ........300.........310 .........320........
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Query Sequence  VKGAFTGAISNRSGKFEMADNGTLFLDEIGEL. . SLALQAKLLRVLQYGDIQR. . . . . . . . . VGDDRCLRVDVRVLAATN
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Template Sequence  CDYD. . . . . . . . . . . VQKAQRGIVYIDQIDKISRGEGVQQALLKLIEGVDTSKILFICGGAFAGLDKVISHRVSEGELLA
Template Known Secondary structure  TTT
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TTSS

TT

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   169170.. .......180.........190.........200.........210.........220.........230.......
 
   329330.........340.........350.........360....... ..370.........380.........390.........400...
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Query Sequence  RDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVIL. . . . LAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGN.
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Template Sequence  QVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVD. LEFRDEALDAIAKKAMARKT
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   289290.........300.........310.........320.........330.........340....... ..350.........360.......
 
   404.....410.........420........
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Query Sequence  . VRELEHAIHRAVVLARATRSGDEVI
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Template Sequence  GARGLRSIVEAALLDTMYDLPSMEDV
Template Known Secondary structure  TTSSTTS

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   368.370.........380.........390...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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