Job Description P37013 Confidence 99.95% Date Thu Jan 5 11:54:23 GMT 2012 Rank 6 Aligned Residues 132 % Identity 24% Template c3co5B_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:putative two-component system transcriptional response PDBTitle: crystal structure of sigma-54 interaction domain of putative2 transcriptional response regulator from neisseria gonorrhoeae Resolution 2.40 Å

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		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	P	G	M	T	Q	L	K	K	E	I	E	I	V	A	A	S	D	L	N	V	L	I	S	G	E	T	G	T	G	K	E	L	V	A	K	A	I	H	E	A	S	P	R	A	V	N	P	L	V	Y	L	N	C	A	A	L	P	E	S	V	A	E	S	E	L	F	G	H	V	K	G	A	F	T	G	A	I	S
Query Conservation
Alig confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	S	A	A	I	Q	E	X	N	R	E	V	E	A	A	A	K	R	T	S	P	V	F	L	T	G	E	A	G	S	P	F	E	T	V	A	R	Y	F	H	K	N	G	T	P	W	V	S	P	A	R	V	E	Y	L	I	D	X	P	X	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																		T		S	S								T	T									T	T			T	T	S						S	S	T	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	R	S	G	K	F	E	M	A	D	N	G	T	L	F	L	D	E	I	G	E	L	S	L	A	L	Q	A	K	L	L	R	V	L	Q	Y	G	D	I	Q	R	V	G	D	D	R	C	L	R	V	D	V	R	V	L	A	A	T	N	R	D	L	R	E	E	V	L	A	G	R	F	R	A	D	L	F	H	R	L	S
Query Conservation
Alig confidence		.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.																		.	.	.	.
Template Conservation		.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.																		.	.	.	.
Template Sequence		.	.	.	.	.	L	Q	K	A	E	G	G	V	L	Y	V	G	D	I	A	Q	Y	S	R	N	I	Q	T	G	I	T	F	I	I	G	K	.	.	.	.	.	.	.	.	.	.	A	E	R	C	R	V	R	V	I	A	S	C	S	Y	A	A	G	.	.	.	.	S	D	S	C	E	E	K	L	A	G	L	F	S
Template Known Secondary structure		.	.	.	.	.				T	T	T	S								T	T																.	.	.	.	.	.	.	.	.	.		T	T	T	T											T	T	.	.	.	.	T											S	S
Template Predicted Secondary structure		.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.																		.	.	.	.
Template SS confidence
							200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230											.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.					.	.	250	.	.	.	.	.	.	.	.	.	260
		350	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	P	L	S	V	P	P	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	S	V	V	R	I	P	P	L
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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