Job Description P37013 Confidence 99.09% Date Thu Jan 5 11:54:23 GMT 2012 Rank 99 Aligned Residues 199 % Identity 24% Template c3cf1C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx Resolution 4.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.												.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	V	K	Q	T	Q	M	I	G	L	S	P	G	M	T	Q	L	K	K	E	I	E	I	.	.	.	.	.	.	.	.	.	.	.	V	A	A	S	D	L	N	V	L	I	S	G	E	T	G	T	G	K	E	L	V	A	K	A	I	H	E	A	S	P	R	A	V	N	P	L	V	Y	L	N	C	A	A	L	P
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.																										.	.	.																.	.
Template Conservation																																																														.	.	.																.	.
Template Sequence		P	Q	V	T	W	E	D	I	G	G	L	E	D	V	K	R	E	L	Q	E	L	V	Q	Y	P	V	E	H	P	D	K	F	L	K	F	G	M	T	P	S	K	G	V	L	F	Y	G	P	P	G	C	G	K	T	L	L	A	K	A	I	.	.	.	A	N	E	C	Q	A	N	F	I	S	I	K	G	P	E	.	.
Template Known Secondary structure						T	T	T	T		S																								T	S						S								T	T	S										.	.	.				T	T											.	.
Template Predicted Secondary structure																																																														.	.	.																.	.
Template SS confidence
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.				.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.															.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	S	V	A	E	S	E	L	F	G	H	V	K	G	A	F	T	G	A	I	S	N	R	S	G	K	F	E	M	A	D	N	G	T	L	F	L	D	E	I	G	E	L	S	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	A	K	L	L	R	V	L	Q	Y	G	D	I	Q	R	V	G	D	D
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																																																																	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	L	L	T	M	W	F	G	E	S	E	A	N	V	R	E	I	F	D	K	A	R	Q	A	A	P	C	V	L	F	F	D	E	L	D	S	I	A	K	A	R	G	G	N	I	G	D	G	G	G	A	A	D	R	V	I	N	Q	I	L	T	E	M	D	G	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.						T	T	T		T							T	T	T	T	T	T	T		S						S	S	G	G	G	G					T	T	T	T		S	S			S														S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.																																																																	.	.	.	.	.	.	.	.	.
Template SS confidence
									547	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.			.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																																		.	.				.
Query SS confidence																																		.	.				.
Query Sequence		R	C	L	R	V	D	V	R	V	L	A	A	T	N	R	D	L	R	E	E	V	L	A	G	R	F	R	A	D	L	F	H	.	.	R	L	S	.	V	F	P	L	S	V	P	P	L	R	E	R	G	D	D	V	I	L	L	A	G	Y	F	C	E	Q	C	R	L	R	Q	G	L	S	R	V	V	L	S	A	G	A
Query Conservation																																		.	.				.
Alig confidence																		.	.	.	.	.	.	.										.	.				.															.	.	.	.	.	.	.	.													.					.	.	.
Template Conservation																		.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.													.					.	.	.
Template Sequence		M	S	T	K	K	N	V	F	I	I	G	A	T	N	R	P	.	.	.	.	.	.	.	D	I	I	D	P	A	I	L	R	P	G	R	L	D	Q	L	I	Y	I	P	L	P	D	E	K	S	R	V	A	.	.	.	.	.	.	.	.	I	L	K	A	N	L	R	K	S	P	V	A	.	K	D	V	D	.	.	.
Template Known Secondary structure		S		T	T	S	S								S		G	.	.	.	.	.	.	.	G	G			G	G	G	T	S	T	T	T	S											T	T					.	.	.	.	.	.	.	.						T	T	T	S		B		.	S	S			.	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.													.					.	.	.
Template SS confidence
		611	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.								.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.									.	.	.	.	660	.	.	.	.	.	.	.		.	.	670	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	N	L	L	Q	H	Y	S	F	P	G	N	V	R	E	L	E	H	A	I	H	R	A	V	V	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	F	L	A	K	M	T	N	G	F	S	G	A	D	L	T	E	I	C	Q	R	A	C	K	L	A
Template Known Secondary structure						T	T	T		S	S															T	T
Template Predicted Secondary structure
Template SS confidence
		672	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions