Job Description P37013 Confidence 99.10% Date Thu Jan 5 11:54:23 GMT 2012 Rank 97 Aligned Residues 208 % Identity 15% Template c2veaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:phytochrome-like protein cph1; PDBTitle: the complete sensory module of the cyanobacterial2 phytochrome cph1 in the pr-state. Resolution 2.21 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50				.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																													.	.	.																									.
Query SS confidence																																													.	.	.																									.
Query Sequence		L	A	N	I	A	I	E	L	Q	R	G	I	G	H	Q	D	R	F	Q	R	L	I	T	T	L	R	Q	V	L	E	C	D	A	S	A	L	L	R	Y	D	S	R	Q	.	.	.	F	I	P	L	A	I	D	G	L	A	K	D	V	L	G	R	R	F	A	L	E	G	H	P	.	R	L	E	A	I	A	R	A	G
Query Conservation																																													.	.	.																									.
Alig confidence																																													.	.	.																									.
Template Conservation
Template Sequence		F	Y	H	M	A	N	A	A	L	N	R	L	N	L	R	D	F	Y	D	V	I	V	E	E	V	R	R	M	T	G	F	D	R	V	M	L	Y	R	F	D	E	N	N	H	G	D	V	I	A	E	D	K	R	D	D	M	E	P	Y	L	G	L	H	Y	P	E	S	D	I	P	Q	P	A	R	R	L	F	I	H	N
Template Known Secondary structure		T	T																														S									T	T	S											T	T	S				T	T					G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.																								.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	V	V	R	F	P	A	D	S	E	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	Y	D	G	L	I	P	G	Q	E	S	L	K	V	H	A	C	V	G	L	P	L	F	A	G	Q	N	L	I	G	A	L	T	L	D	G	M	Q	P	D	Q	F	D	V
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	I	R	V	I	P	D	V	Y	G	V	A	V	P	L	T	P	A	V	N	P	S	T	N	R	A	V	D	L	T	E	S	I	L	R	S	A	Y	H	C	H	L	T	Y	L	K	N	M	G	V	G	A	S	L	T	I	S	L	I	K	D	G	H	L	W	G	L	I	A	C	H	H	Q	T	P	K	V	I	P	F
Template Known Secondary structure		S					S		S	S	S							S	S			T	T	T	T						T	T		S	S	B														T		S										T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	D	E	E	L	R	L	I	A	A	L	A	A	G	A	L	S	N	A	L	L	I	E	Q	L	E	S	Q	N	M	L	P	G	D	A	T	P	F	E	A	V	K	Q	T	Q	M	I	G	L	S	P	G	M	T	Q	L	K	K	E	I	E	I	V	A	A	S	D	L	N	V	L	I	S	G	E
Query Conservation
Alig confidence																																									.
Template Conservation																																									.
Template Sequence		E	L	R	K	A	C	E	F	F	G	R	V	V	F	S	N	I	S	A	Q	E	D	T	E	T	F	D	Y	R	V	Q	L	A	E	H	E	A	V	L	.	L	D	K	M	T	T	A	A	D	F	V	E	G	L	T	N	H	P	D	R	L	L	G	L	T	G	S	Q	G	A	A	I	C	F	G	E
Template Known Secondary structure																																									.							S	S	S							T								T	T	T		S							T	T
Template Predicted Secondary structure																																									.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.		.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions