Job Description P37013 Confidence 88.68% Date Thu Jan 5 11:54:23 GMT 2012 Rank 411 Aligned Residues 150 % Identity 13% Template c2uv0G_ PDB info PDB header:transcription Chain: G: PDB Molecule:transcriptional activator protein lasr; PDBTitle: structure of the p. aeruginosa lasr ligand-binding domain2 bound to its autoinducer Resolution 1.8 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.					.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																									.	.	.	.																								.	.
Query SS confidence																																									.	.	.	.																								.	.
Query Sequence		L	A	N	I	A	I	E	L	Q	R	G	I	G	H	Q	D	R	F	Q	R	L	I	T	T	L	R	Q	V	L	E	C	D	A	S	A	L	L	R	Y	.	.	.	.	D	S	R	Q	F	I	P	L	A	I	D	G	L	A	K	D	V	L	G	R	R	F	A	.	.	L	E	G	H	P	R	L	E	A	I	A	R
Query Conservation																																									.	.	.	.																								.	.
Alig confidence																						.																			.	.	.	.																								.	.
Template Conservation																						.
Template Sequence		L	V	D	G	F	L	E	L	E	R	S	S	G	K	L	E	W	S	A	I	.	L	Q	K	X	A	S	D	L	G	F	S	K	I	L	F	G	L	L	P	K	D	S	Q	D	Y	E	N	A	F	I	V	G	N	Y	P	A	A	W	R	E	H	Y	D	R	A	G	Y	A	R	V	D	P	T	V	S	H	C	T	Q
Template Known Secondary structure										T	T											.									T											T	T				G	G	G	S						S											T	T	G	G	G	T
Template Predicted Secondary structure																						.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence		A	G	D	V	V	R	F	P	A	D	S	E	L	P	D	P	Y	D	G	L	I	P	G	Q	E	S	L	K	V	H	A	C	V	G	L	P	L	F	A	G	Q	N	L	I	G	A	L	T	L	D	G	.	.	M	Q	P	D	Q	F	D	V	F	S	D	E	E	L	R	L	I	A	A	L	A	A	G	A	L	S
Query Conservation																																																					.	.
Alig confidence																																																					.	.
Template Conservation
Template Sequence		S	V	L	P	I	F	W	E	P	S	I	Y	Q	T	R	K	Q	H	E	F	F	E	E	A	S	A	A	G	L	V	Y	G	L	T	X	P	L	H	G	A	R	G	E	L	G	A	L	S	L	S	V	E	A	E	N	R	A	E	A	N	R	F	X	E	S	V	L	P	T	L	W	X	L	K	D	Y	A	L	Q
Template Known Secondary structure			S	S						G	G	G			S													T	T		S										T	T	S												S	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions