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Job DescriptionP37013
Confidence99.15%DateThu Jan 5 11:54:23 GMT 2012
Rank89Aligned Residues208
% Identity17%Templatec1sxjD_
PDB info PDB header:replicationChain: D: PDB Molecule:activator 1 41 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna)
Resolution2.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  PFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEA. . . . SPRAVNPLVYLNCAALPESVAE
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Template Sequence  KYRPKNLDEVTAQDHAVTVLKKTLK. . SANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVR
Template Known Secondary structure  T

SSTTT

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Query Sequence  SELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLRE
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Template Sequence  EKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS. . . . . . . . . . . GVTRFCLICN. . . . .
Template Known Secondary structure  TS





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Query Sequence  EVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHR
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Template Sequence  . . YVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQ. . . . . . . . . . . ENVKCDDGVLERILDIS. AGDLRRGITLLQS
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   172.......180.........190.........200....... ..210.........220.... .....230.......
 
   414...
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Query Sequence  AVVL
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Template Sequence  ASKG
Template Known Secondary structure  T
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   238.240.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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