Job Description P37013 Confidence 98.96% Date Thu Jan 5 11:54:23 GMT 2012 Rank 112 Aligned Residues 204 % Identity 18% Template c1sxjC_ PDB info PDB header:replication Chain: C: PDB Molecule:activator 1 40 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		P	F	E	A	V	K	Q	T	Q	M	I	G	L	S	P	G	M	T	Q	L	K	K	E	I	E	I	V	A	A	S	D	L	N	V	L	I	S	G	E	T	G	T	G	K	E	L	V	A	K	A	I	H	E	.	.	A	S	P	R	A	V	N	P	L	V	Y	L	N	C	A	A	L	P	E	S	V	A	E	S	E
Query Conservation																																																							.	.
Alig confidence																																	.	.																					.	.
Template Conservation																																	.	.
Template Sequence		K	Y	R	P	E	T	L	D	E	V	Y	G	Q	N	E	V	I	T	T	V	R	K	F	V	D	E	G	K	L	P	H	.	.	L	L	F	Y	G	P	P	G	T	G	K	T	S	T	I	V	A	L	A	R	E	I	Y	G	K	N	Y	S	N	M	V	L	E	L	N	A	S	D	D	R	G	I	D	V	V	R	N
Template Known Secondary structure			T			S	S	G	G	G			S														T	T					.	.						S	S	S	S	S														T	T	S										T	T	S			S						T
Template Predicted Secondary structure																																	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.			.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	G	H	V	K	G	A	F	T	G	A	I	S	N	R	S	G	K	F	E	M	A	D	N	G	T	L	F	L	D	E	I	G	E	L	S	L	A	L	Q	A	K	L	L	R	V	L	Q	Y	G	D	I	Q	R	V	G	D	D	R	C	L	R	V	D	V	R	V	L	A	A	T	N	R	D	L	R	E	E	V
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Sequence		Q	I	K	.	.	.	.	.	.	.	.	.	D	F	A	S	T	R	Q	I	F	S	K	G	F	K	L	I	I	L	D	E	A	D	A	M	T	N	A	A	Q	N	A	L	R	R	V	I	E	R	Y	T	.	.	.	.	.	.	.	.	.	.	.	K	N	T	R	F	C	V	L	A	N	Y	A	H	K	.	.	.
Template Known Secondary structure					.	.	.	.	.	.	.	.	.					S			S	S	S		S							T	T	G	G	G	S															T	T	.	.	.	.	.	.	.	.	.	.	.	T	T								S		G	G	G	.	.	.
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template SS confidence
		96	.	.										.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.												.	140	.	.	.	.	.	.	.	.	.	150	.	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	G	R	F	R	A	D	L	F	H	R	L	S	V	F	P	L	S	V	P	P	L	R	E	R	G	D	D	V	I	L	L	A	G	Y	F	C	E	Q	C	R	L	R	Q	G	L	S	R	V	V	L	S	A	G	A	R	N	L	L	Q	H	Y	S	F	P	G	N	V	R	E	L	E	H	A	I	H	R	A	V
Query Conservation
Alig confidence		.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation		.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.																														.
Template Sequence		.	.	.	.	L	T	P	A	L	L	S	Q	C	T	R	F	R	F	Q	P	L	P	Q	E	A	.	.	.	.	.	.	.	.	.	.	.	I	E	R	R	I	A	N	V	L	V	H	E	K	L	K	L	S	P	N	A	E	K	A	L	I	E	L	S	N	.	G	D	M	R	R	V	L	N	V	L	Q	S	C	K
Template Known Secondary structure		.	.	.	.	S						T	T	S													.	.	.	.	.	.	.	.	.	.	.											T	T	T			B													T	.	T									T	T	T	T	T
Template Predicted Secondary structure		.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.																														.
Template SS confidence
						153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.												.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.	.	.
		416	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	A	R	A	T	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	L	D	N	P	D
Template Known Secondary structure		T	T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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