Job Description P37013 Confidence 99.65% Date Thu Jan 5 11:54:23 GMT 2012 Rank 26 Aligned Residues 203 % Identity 17% Template c1nsfA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor; PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf) Resolution 1.90 Å

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		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.									.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.
Query Sequence		D	A	T	P	F	E	A	V	K	Q	T	Q	M	I	G	L	S	P	G	M	T	Q	L	K	K	E	I	E	I	V	A	.	.	.	.	.	.	.	.	A	S	D	L	N	V	L	I	S	G	E	T	G	T	G	K	E	L	V	A	K	A	I	H	E	A	S	P	R	A	V	N	P	L	V	Y	L	N	C	A	A
Query Conservation																																	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.																												.	.	.
Template Conservation																																																																				.	.	.
Template Sequence		N	Q	E	D	Y	A	S	Y	I	M	N	G	I	I	K	W	G	D	P	V	T	R	V	L	D	D	G	E	L	L	V	Q	Q	T	K	N	S	D	R	T	P	L	V	S	V	L	L	E	G	P	P	H	S	G	K	T	A	L	A	A	K	I	A	E	E	S	.	.	.	N	F	P	F	I	K	I	C	S	P	D
Template Known Secondary structure		B				T	T	T	T		T	T						S																					S	S		S									S	T	T	S	S													.	.	.			S							G	G
Template Predicted Secondary structure																																																																				.	.	.
Template SS confidence
		495	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560				.	.	.	.	.	.	.	.	.	570	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.											.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.
Query Sequence		L	P	E	S	V	A	E	S	E	L	F	G	H	V	K	G	A	F	T	G	A	I	S	N	R	S	G	K	F	E	M	A	D	N	G	T	L	F	L	D	E	I	G	E	L	S	.	.	.	.	.	.	.	.	.	.	L	A	L	Q	A	K	L	L	R	V	L	Q	Y	G	D	I	Q	R	V	G	D	D	R	C
Query Conservation																																																.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.
Template Sequence		K	M	I	G	F	S	E	T	A	K	C	Q	A	M	K	K	I	F	D	D	A	Y	K	S	Q	L	.	.	.	.	.	.	.	.	S	C	V	V	V	D	D	I	E	R	L	L	D	Y	V	P	I	G	P	R	F	S	N	L	V	L	Q	A	L	L	V	L	L	K	.	.	.	.	.	.	.	.	K	A	P	P
Template Known Secondary structure		G	S	T	T																			T	S	S		.	.	.	.	.	.	.	.												T	T		B	T	T	T	T	B													T	T	.	.	.	.	.	.	.	.				S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.
Template SS confidence
		572	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.									.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.									.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.			330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		L	R	V	D	V	R	V	L	A	A	T	N	R	.	.	D	L	R	E	E	V	L	A	G	R	F	R	A	D	L	F	H	R	L	S	V	F	P	L	S	V	P	P	L	R	E	R	G	D	D	V	I	L	L	A	G	Y	F	C	E	Q	C	R	L	R	Q	G	L	S	R	V	V	L	S	A	G	A	R	N	L
Query Conservation															.	.
Alig confidence															.	.													.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template Sequence		Q	G	R	K	L	L	I	I	G	T	T	S	R	K	D	V	L	Q	E	M	E	M	L	N	A	F	S	.	.	.	.	.	.	.	.	.	T	T	I	H	V	P	N	I	A	T	G	E	Q	.	.	.	.	.	.	.	.	.	L	L	E	A	L	E	L	L	G	N	F	K	D	K	E	R	T	T	I	A	Q	Q
Template Known Secondary structure		T	T										S								T	T	G	G	G	T	S	S	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.									T		S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template SS confidence
		636	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.										.	.	.	.	.	.	.	670	.	.	.	.	.										.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	H	Y	S	F	P	G	N	V	R	E	L	E	H	A	I	H	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	G	K	K	V	W	I	G	I	K	K	L	L	M	L	I	E	M	S
Template Known Secondary structure			T	T	S
Template Predicted Secondary structure
Template SS confidence
		698	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions