 |
Job Description | P37617 | Confidence | 79.78% | Date | Thu Jan 5 11:55:52 GMT 2012 |
Rank | 192 | Aligned Residues | 105 |
% Identity | 19% | Template | c2i2xD_ |
PDB info |
PDB header:transferase | Chain: D: PDB Molecule:methyltransferase 1; |
PDBTitle: crystal structure of methanol:cobalamin methyltransferase complex2 mtabc from methanosarcina barkeri
|
Resolution | 2.50 Å |
|
 |
  |   |
511 | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | G | E | R | V | L | I | C | A | A | G | K | H | P | A | D | A | F | T | G | L | I | N | E | L | E | S | A | G | Q | T | V | V | L | V | V | R | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
N | D | D | V | L | G | V | I | A | L | Q | D | T | L | R | A | D | A | A | T | A | I | S | E | L | N | A | L | G |
Query Conservation |   |
  |
|   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |
|   |
|   |
|   |
|   |
|
|   |   |
|   |   |   |
|   |   |
|
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|
|
|   |
|   |   |
|
|   |
|   |
|
|   |   |
|
|   |   |   |
|   |   |   |
|   |   |
|   |   |
|
|   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|
Template Sequence |   |
K | G | T | V | V | C | H | V | A | E | G | D | V | H | D | I | G | K | N | I | V | T | A | L | L | R | A | N | G | Y | N | V | V | D | L | G | R | D | V | P | A | E | E | V | L | A | A | V | Q | K | E | K | P | I | M | L | T | G | T | A | L | M | T | T | T | M | Y | A | F | K | E | V | N | D | M | L | L | E | N | G |
Template Known Secondary structure |   |
S |
|  |  |  |  |  |  |  | T | T |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |  |  |  |  |  |
| T |  |  |  |  |  |  |  |  |  |  |
|
| S |  |  |  |  |  |
|
| S | T | T | T | T | T |  |  |  |  |  |  |  |  |  |  | T | T | T |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
123 | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . |
  |
  |   |
577 | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | . | . | . | . | . | . | . | 610 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | K | G | V | I | L | T | G | D | N | P | R | A | A | A | A | I | A | G | E | L | G | L | E | F | K | A | G | L | L | P | E | D | K | V | K | A | V | T | E | L |
Query Conservation |   |
|   |
|   |
|
|
|
|
|   |   |   |
|
|   |   |
|
|   |   |
|
|
|   |
|   |
|   |   |   |
|
|   |
|   |   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |
|
|
|   |   |   |   | . |   |   |   |   |   |   |   |
|
|
|   |   |   |   | . |
|
|   |   |
|
|   |   |
|   |   |
|
Template Sequence |   |
I | K | I | P | F | A | C | G | G | G | A | V | N | . |
Q | D | F | V | S | Q | F | A | L | G | V | Y | G | E | . |
E | A | A | D | A | P | K | I | A | D | A | I |
Template Known Secondary structure |   |
|
|
|
|  |  |  |  |
| T | T |
|
| . | T | T | T | G | G | G | S | S | S |  |  |  |
| S | . | S | T | T |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |
|
|
|
|
| . |  |  |  |  |  |  |  |
|
|
|  |  |  |
| . |
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
203 | . | . | . | . | . | . | 210 | . | . | . | . | . | |
. | . | . | . | 220 | . | . | . | . | . | . | . | . | . | |
230 | . | . | . | . | . | . | . | . | . | 240 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|