Job Description P37617 Confidence 100.00% Date Thu Jan 5 11:55:52 GMT 2012 Rank 4 Aligned Residues 549 % Identity 26% Template c1mhsA_ PDB info PDB header:membrane protein, proton transport Chain: A: PDB Molecule:plasma membrane atpase; PDBTitle: model of neurospora crassa proton atpase Resolution 8.00 Å

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		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	L	I	K	S	G	S	Y	F	A	I	E	T	L	M	S	V	A	A	I	G	A	L	F	I	G	A	T	A	E	A	A	M	V	L	L	L	F	L	I	G	E	R	L	E	G	W	A	A	S	R	A	R	Q	G	V	S	A	L	M	A	L	K	P	E	T	A	T	R	L	R	K	G	E	R	E	E	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	L	K	F	L	G	F	F	V	G	P	I	Q	F	V	M	E	G	A	A	V	L	A	A	G	L	E	D	W	V	D	F	G	V	I	C	G	L	L	L	L	N	A	V	V	G	F	V	Q	E	F	Q	A	G	S	I	V	D	E	L	K	K	T	L	A	L	K	A	V	V	L	R	D	G	T	L	K	E	I	E
Template Known Secondary structure						T																			T	T		S		S	S																													T	T	T	T				S	S						S	S	S
Template Predicted Secondary structure
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		I	N	S	L	R	P	G	D	V	I	E	V	A	A	G	G	R	L	P	A	D	G	K	L	L	S	P	F	.	.	A	S	F	D	E	S	A	L	T	G	E	S	I	P	V	E	R	A	T	G	D	K	V	P	A	G	A	T	S	V	D	R	L	V	T	L	E	V	L	S	E	P	G	A	S	A	I	D	R	I
Query Conservation																														.	.
Alig confidence																														.	.
Template Conservation
Template Sequence		A	P	E	V	V	P	G	D	I	L	Q	V	E	E	G	T	I	I	P	A	D	G	R	I	V	T	D	D	A	F	L	Q	V	D	Q	S	A	L	T	G	E	S	L	A	V	D	K	H	K	G	D	Q	V	F	A	S	S	A	V	K	R	G	E	A	F	V	V	I	T	A	T	G	D	N	T	F	V	G	R	A
Template Known Secondary structure		T	T	T	S		T	T	S						T	T		B		S	S								S	S					B		T	T	T	S	S									S	S					S		B			S												S	T	T		S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	L	I	E	E	A	E	E	R	R	A	P	I	E	R	F	I	D	R	F	S	R	I	Y	T	P	A	I	M	A	V	A	L	L	V	T	L	V	P	P	L	L	F	A	A	S	W	Q	E	W	I	Y	K	G	L	T	L	L	L	I	G	C	P	C	A	L	V	I	S	T	P	A	A	I	T	S	G	L	A
Query Conservation
Alig confidence																																													.
Template Conservation																																													.
Template Sequence		A	A	L	V	N	A	A	S	G	G	S	G	H	F	T	E	V	L	N	G	I	G	T	I	L	L	I	L	V	I	F	T	L	L	I	V	W	V	S	S	F	Y	R	.	S	N	P	I	V	Q	I	L	E	F	T	L	A	I	T	I	I	G	V	P	V	G	L	P	A	V	V	T	T	T	M	A	V	G	A	A
Template Known Secondary structure		T	S	S																																				T	T	T	T	T	.	T																		S
Template Predicted Secondary structure																																													.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.				470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.
Query SS confidence																																																														.	.	.
Query Sequence		A	A	A	R	R	G	A	L	I	K	G	G	A	A	L	E	Q	L	G	R	V	T	Q	V	A	F	D	K	T	G	T	L	T	V	G	K	P	R	V	T	A	I	H	P	A	T	G	I	S	E	S	E	L	L	T	L	A	A	A	V	.	.	.	E	Q	G	A	T	H	P	L	A	Q	A	I	V	R	E	A	Q
Query Conservation																																																														.	.	.
Alig confidence																																																														.	.	.
Template Conservation
Template Sequence		Y	L	A	K	K	K	A	I	V	Q	K	L	S	A	I	E	S	L	A	G	V	E	I	L	C	S	D	K	T	G	T	L	T	K	N	K	L	S	L	H	D	P	Y	T	V	A	G	V	D	P	E	D	L	M	L	T	A	C	L	A	A	S	R	K	K	K	G	I	D	A	I	D	K	A	F	L	K	S	L	K
Template Known Secondary structure						T	T						T	T	T						T								T	B	T	T	T	B	S	S		S						B			S					T									S				S	S		S			S
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.																			.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.								.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Query Sequence		V	A	E	L	A	I	P	T	A	E	S	Q	R	A	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	G	I	E	A	Q	V	N	G	E	R	V	L	I	C	A	A	G	K	H	P	.	.	.	.	.	.	.	A	D	A	F	T	G	L	I	N	E	L	E	S	A	G	Q	T
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	Y	P	R	A	K	S	V	L	S	K	Y	K	V	L	Q	F	H	P	F	D	P	V	S	K	K	V	V	A	V	V	E	S	P	Q	G	E	R	I	T	C	V	K	G	A	P	L	F	V	L	K	T	V	E	E	D	H	P	I	P	E	E	V	D	Q	A	Y	K	N	K	V	A	E	F	A	T	R	G	F	R
Template Known Secondary structure			S	S	S			G	G	G	S												T	T	T	T									S	S	S	S																			S	S																			T	S	S
Template Predicted Secondary structure
Template SS confidence
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
		542	.	.	.	.	.						.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
Predicted Secondary structure								.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	V	L	V	V	R	.	.	.	.	.	N	D	D	V	L	G	V	I	A	L	Q	D	T	L	R	A	D	A	A	T	A	I	S	E	L	N	A	L	G	V	K	G	V	I	L	T	G	D	N	P	R	A	A	A	A	I	A	G	E	L	G	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation								.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	L	G	V	A	R	K	R	G	E	G	S	W	E	I	L	G	I	M	P	C	M	D	P	P	R	H	D	T	Y	K	T	V	C	E	A	K	T	L	G	L	S	I	K	M	L	T	G	D	A	V	G	I	A	R	E	T	S	R	Q	L	G	L	G	T	N	I	Y	N	A	E	R	L	G	L	G	G	G	G	D
Template Known Secondary structure									S	S	S		S					B	B																						T								S	S													T	S	S		S				S	S	S	S	S	S		B
Template Predicted Secondary structure
Template SS confidence
		512	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.
																601	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.		.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	K	A	G	L	L	P	E	D	K	V	K	A	V	T	E	L	N	Q	H	A	.	P	L	A	M	V	G	D	G	I	N	D	A	P	A	M	K	A	A	A	I	G	I	A	M	G	S	G	T	D	V	A	L	E	T	A	D	A	A	L	T	H	N	H	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation
Template Sequence		M	P	G	S	E	V	Y	D	F	V	E	A	A	D	G	F	A	E	V	F	P	Q	H	K	Y	N	V	V	E	I	L	Q	Q	R	G	Y	L	V	A	M	T	G	D	G	V	N	D	A	P	S	L	K	K	A	D	T	G	I	A	V	E	G	S	S	D	A	A	R	S	A	A	D	I	V	F	L	A	P	G	L
Template Known Secondary structure		G	G	G	G	G	G	G	T	T	T	T	T	T	S				S			S	T											T	T	T										G	G	G							S	S						T	T	S							S	S	S				S	S			S
Template Predicted Secondary structure
Template SS confidence
		592	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.
		666	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	L	V	Q	M	I	E	L	A	R	A	T	H	A	N	I	R	Q	N	I	T	I	A	L	G	L	K	G	I	F	L	V	T	T	L	L	G	M	T	G	L	W	L	A	V	L	A	D	T	G	A	T	V	L	V	T	A	N	A	L
Query Conservation
Alig confidence																															.	.	.	.	.
Template Conservation																															.	.	.	.	.
Template Sequence		G	A	I	I	D	A	L	K	T	S	R	Q	I	F	H	R	M	Y	A	Y	V	V	Y	R	I	A	L	S	I	.	.	.	.	.	H	L	E	I	F	L	G	L	W	I	A	I	L	N	R	S	L	N	I	E	L	V	V	F	I	A	I
Template Known Secondary structure																															.	.	.	.	.												S		S
Template Predicted Secondary structure																															.	.	.	.	.
Template SS confidence
		672	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700						.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.