Job Description P75830 Confidence 100.00% Date Thu Jan 5 12:14:47 GMT 2012 Rank 1 Aligned Residues 292 % Identity 20% Template c3h9iB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:cation efflux system protein cusb; PDBTitle: crystal structure of the membrane fusion protein cusb from escherichia2 coli Resolution 3.40 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.																				.
Query SS confidence																													.	.																				.
Query Sequence		A	P	V	P	T	Y	Q	T	L	I	V	R	P	G	D	L	Q	Q	S	V	L	A	T	G	K	L	D	.	.	A	L	R	K	V	D	V	G	A	Q	V	S	G	Q	L	K	T	L	S	.	V	A	I	G	D	K	V	K	K	D	Q	L	L	G	V	I	D	P	E	Q	A	E	N	Q	I	K	E	V	E	A	T
Query Conservation																													.	.																				.
Alig confidence																													.	.																				.																								.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		T	Q	N	L	G	V	K	T	A	T	V	T	R	G	P	L	T	F	A	Q	S	F	P	A	N	V	S	Y	N	E	Y	Q	Y	A	I	V	Q	A	R	A	A	G	F	I	D	K	V	Y	P	L	T	V	G	D	K	V	Q	K	G	T	P	L	L	D	L	T	I	P	D	W	V	E	.	.	.	.	.	.	.	.
Template Known Secondary structure													B																B		T	T									S									S			S	S					T	T														.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	E	L	R	A	Q	R	Q	Q	A	E	A	E	L	K	L	A	R	V	T	Y	S	R	Q	Q	R	L	A	Q	T	K	A	V	S	Q	Q	D	L	D	T	A	A	T	E	M	A	V	K	Q	A	Q	I	G	T	I	D	A	Q	I	K	R	N	Q	A	S	L	D	T	A	K	T	N	L	D	Y	T	R	I	V
Query Conservation
Alig confidence		.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	A	Q	S	E	Y	L	L	L	R	E	T	G	G	T	A	T	Q	T	E	G	I	L	E	R	L	R	L	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	P	E	A	D	I	R	R	L	I	A	T	Q	K	I	Q	T	R	F	T	L	K
Template Known Secondary structure		.	.	.											S																		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.																											190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	M	A	G	E	V	T	Q	I	T	T	L	Q	G	Q	T	V	I	A	A	Q	Q	A	P	N	I	L	T	L	A	D	M	S	A	M	L	V	K	A	Q	V	S	E	A	D	V	I	H	L	K	P	G	Q	K	A	W	F	T	V	L	G	D	P	L	T	R	Y	E	G	Q	I	K	D	V	L	P	T	P	E
Query Conservation
Alig confidence																								.	.	.
Template Conservation																								.	.	.
Template Sequence		A	P	I	D	G	V	I	T	A	F	D	L	R	A	G	M	N	I	A	K	D	N	.	.	.	V	V	A	K	I	Q	G	M	D	P	V	W	V	T	A	A	I	P	E	S	I	A	W	L	V	K	D	A	S	Q	F	T	L	T	V	P	A	R	P	D	K	T	L	T	I	R	K	W	T	L	L	P	G	V	D
Template Known Secondary structure			S	S					S						S	S					S			.	.	.									S																			G	G	G						S	S				S
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.				.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	N	D	A	I	F	Y	Y	A	R	F	E	V	P	N	P	N	G	L	L	R	L	D	M	T	A	Q	V	H	I	Q	L	T	D	V	K	N	V	L	T	I	P	L	S	A	L	G	D	P	V	G	D	N	R	Y	K	V	K	L	L	R	N	G	E	T	R	E	R	E	V	T	I	G	A	R	N	D	T	D
Query Conservation
Alig confidence						.	.																																.																	.
Template Conservation						.	.																																.																	.
Template Sequence		A	A	T	R	.	.	T	L	Q	L	R	L	E	V	D	N	A	D	E	A	L	K	P	G	M	N	A	W	L	Q	L	N	T	A	S	E	P	.	M	L	L	I	P	S	Q	A	L	I	D	T	G	S	E	Q	.	R	V	I	T	V	D	A	D	G	R	F	V	P	K	R	V	A	V	F	Q	A	S	Q	G	V
Template Known Secondary structure		T	T	T	T	.	.												S	S				T	T												S		.						G	G	G		B		S	S	S			.							S	S	S														T	T
Template Predicted Secondary structure						.	.																																.																	.
Template SS confidence
		289	290	.	.			.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	I	V	K	G	L	E	A	G	D	E	V	V	I	G	E	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	A	L	R	S	G	L	A	E	G	E	K	V	V	S	S	G	L	F
Template Known Secondary structure							S			T	T					S	S
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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