Job Description P75830 Confidence 99.86% Date Thu Jan 5 12:14:47 GMT 2012 Rank 3 Aligned Residues 228 % Identity 23% Template c2f1mA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:acriflavine resistance protein a; PDBTitle: conformational flexibility in the multidrug efflux system protein acra Resolution 2.71 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	L	A	T	G	K	L	D	A	L	R	K	V	D	V	G	A	Q	V	S	G	Q	L	K	T	L	S	V	A	I	G	D	K	V	K	K	D	Q	L	L	G	V	I	D	P	E	Q	A	E	N	Q	I	K	E	V	E	A	T	L	M	E	L	R	A	Q	R	Q	Q	A	E	A	E	L	K	L	A	R	V	T
Query Conservation
Alig confidence																																																									.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.
Template Sequence		T	T	E	L	P	G	R	T	S	A	Y	R	I	A	E	V	R	P	Q	V	S	G	I	I	L	K	R	N	F	K	E	G	S	D	I	E	A	G	V	S	L	Y	Q	I	D	P	A	T	Y	Q	A	T	Y	D	S	.	.	.	.	.	.	.	A	K	G	D	L	A	K	A	Q	A	A	A	N	I	A	Q	L	T
Template Known Secondary structure												S								S	S									S		T	T					T	T	S		S															.	.	.	.	.	.	.
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.								.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	S	R	Q	Q	R	L	A	Q	T	K	A	V	S	Q	Q	D	L	D	T	A	A	T	E	M	A	V	K	Q	A	Q	I	G	T	I	D	A	Q	I	K	R	N	Q	A	S	L	D	T	A	K	T	N	L	D	Y	T	R	I	V	A	P	M	A	G	E	V	T	Q	I	T	T	L	Q	G	Q	T	V	I	A	A
Query Conservation
Alig confidence																													.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.
Template Sequence		V	N	R	Y	Q	K	L	L	G	T	Q	Y	I	S	K	Q	E	Y	D	Q	A	L	A	D	A	Q	Q	.	.	.	.	.	.	.	A	N	A	A	V	T	A	A	K	A	A	V	E	T	A	R	I	N	L	A	Y	T	K	V	T	S	P	I	S	G	R	I	G	K	S	N	V	T	E	G	A	L	V	Q	N	G
Template Known Secondary structure							T	T	T	T	S	T	T																.	.	.	.	.	.	.																					T	T					S	S								S	S		T	T					T	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.								.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	A	P	N	I	L	T	L	A	D	M	S	A	M	L	V	K	A	Q	V	S	E	A	D	V	I	H	L	K	P	G	Q	K	A	W	F	T	V	L	G	D	P	L	T	R	Y	E	G	Q	I	K	D	V	L	P	T	P	E	K	V	N	D	A	I	F	Y	Y	A	R	F	E	V	P	N	P	N	G	L	L
Query Conservation
Alig confidence				.																							.	.	.	.	.																																			.	.
Template Conservation				.																							.	.	.	.	.																																			.	.
Template Sequence		Q	A	.	T	A	L	A	T	V	Q	Q	L	D	P	I	Y	V	D	V	T	Q	S	S	N	D	.	.	.	.	.	X	K	A	K	V	S	L	I	T	S	D	G	I	K	F	P	Q	D	G	T	L	E	F	S	D	V	T	V	D	Q	T	T	G	S	.	.	I	T	L	R	A	I	F	P	N	P	D	H	T	X
Template Known Secondary structure			S	.	S		S							S	S									T	T	T	.	.	.	.	.										S	S	S		B		S	S		B			S	S	S						S	S	S			.	.										T	T
Template Predicted Secondary structure				.																							.	.	.	.	.																																			.	.
Template SS confidence
		199	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.						.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270
		289	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	D	M	T	A	Q	V	H	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		X	P	G	X	F	V	R	A	R	L
Template Known Secondary structure			S	S
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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