Job Description P77398 Confidence 96.89% Date Thu Jan 5 12:28:36 GMT 2012 Rank 400 Aligned Residues 107 % Identity 21% Template c8ldhA_ PDB info PDB header:oxidoreductase(choh(d)-nad(a)) Chain: A: PDB Molecule:m4 apo-lactate dehydrogenase; PDBTitle: refined crystal structure of dogfish m4 apo-lactate2 dehydrogenase Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.										.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure																															.	.														.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.														.	.	.	.	.	.	.	.	.
Query Sequence		R	R	R	T	R	V	L	I	L	G	V	N	G	F	I	G	N	H	L	T	E	R	L	L	R	E	D	H	Y	.	.	E	V	Y	G	L	D	I	G	S	D	A	I	S	.	.	.	.	.	.	.	.	.	R	F	L	N	H	P	H	F	H	F	V	E	G	D	I	S	I	H	S	E	W	I	E	Y	H	V	K
Query Conservation																															.	.														.	.	.	.	.	.	.	.	.
Alig confidence													.																.		.	.														.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Template Conservation													.																.																																									.	.	.	.	.	.	.	.
Template Sequence		R	S	Y	N	K	I	T	V	V	G	V	.	G	A	V	G	M	A	C	A	I	S	I	L	M	K	D	.	L	A	D	E	V	A	L	V	D	V	M	E	D	K	L	K	G	E	M	M	D	L	Q	H	G	S	L	F	L	H	T	A	K	I	V	S	G	K	D	Y	.	.	.	.	.	.	.	.	S	V	S	A
Template Known Secondary structure				S	S								.	S												T	T	T	.			S							S															T	G	G	G										S	S	G	.	.	.	.	.	.	.	.	G	G	G	T
Template Predicted Secondary structure													.																.																																									.	.	.	.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.									.	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.			.	.	.	.	.	430	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		K	C	D	V	V	L	P	L	V	A	I	A	T	P	I	E	Y	T	R	N	P	L	R	V	F	E	L	D	F	E	E	N	L	R	I	I	R	Y	C	V	K	Y	R	.	.	K	R	I	I	F	P	S
Query Conservation																																													.	.
Alig confidence																					.	.																							.	.
Template Conservation																					.	.
Template Sequence		G	S	K	L	V	V	I	T	A	G	A	R	Q	Q	E	G	E	S	R	.	.	L	N	L	V	Q	R	N	V	N	I	F	K	F	I	I	P	N	I	V	K	H	S	P	D	C	I	I	L	V	V	S
Template Known Secondary structure		T		S												T	T				.	.																							T	T							S
Template Predicted Secondary structure																					.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions