Job Description P77398 Confidence 97.77% Date Thu Jan 5 12:28:36 GMT 2012 Rank 341 Aligned Residues 114 % Identity 17% Template c7mdhA_ PDB info PDB header:chloroplastic malate dehydrogenase Chain: A: PDB Molecule:protein (malate dehydrogenase); PDBTitle: structural basis for light acitvation of a chloroplast enzyme. the2 structure of sorghum nadp-malate dehydrogenase in its oxidized form Resolution 2.40 Å

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		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.								.	.	.	.	.	.	.	.	350	.	.	.	.									.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Query Sequence		C	T	A	R	R	R	T	R	V	L	I	L	G	V	N	G	F	I	G	N	H	L	T	E	R	L	L	R	E	D	H	Y	.	.	.	.	.	.	.	E	V	Y	G	L	D	I	G	S	D	A	I	S	.	.	.	.	.	.	.	.	R	F	L	N	H	P	H	F	H	F	V	E	G	D	I	S	I	H	S	E
Query Conservation																																		.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Alig confidence																																.		.	.	.	.	.	.	.														.	.	.	.	.	.	.	.																				.
Template Conservation																																.																																																	.
Template Sequence		C	T	W	K	K	L	V	N	I	A	V	S	G	A	A	G	M	I	S	N	H	L	L	F	K	L	A	S	G	E	.	V	F	G	Q	D	Q	P	I	A	L	K	L	L	G	S	E	R	S	F	Q	A	L	E	G	V	A	M	E	L	E	D	S	L	Y	P	L	L	R	E	V	S	I	G	I	D	P	Y	E	.
Template Known Secondary structure														T	T	T	S													T	T	.	T	T		T	T											G	G	G													T	T	T		T	T								S					.
Template Predicted Secondary structure																																.																																																	.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.				.	.	.	.	.	430	.
Predicted Secondary structure																																																				.	.	.
Query SS confidence																																																				.	.	.
Query Sequence		W	I	E	Y	H	V	K	K	C	D	V	V	L	P	L	V	A	I	A	T	P	I	E	Y	T	R	N	P	L	R	V	F	E	L	D	F	E	E	N	L	R	I	I	R	Y	C	V	K	Y	R	.	.	.	K	R	I	I	F	P	S
Query Conservation																																																				.	.	.
Alig confidence		.	.	.	.															.	.																															.	.	.
Template Conservation		.	.	.	.															.	.
Template Sequence		.	.	.	.	V	F	E	D	V	D	W	A	L	L	I	G	A	K	.	.	P	R	G	P	G	M	E	R	A	A	L	L	D	I	N	G	Q	I	F	A	D	Q	G	K	A	L	N	A	V	A	S	K	N	V	K	V	L	V	V	G
Template Known Secondary structure		.	.	.	.		T	T	T		S									.	.				T	T																									S		T	T							S
Template Predicted Secondary structure		.	.	.	.															.	.
Template SS confidence
						119	120	.	.	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions