Phyre 2 alignment of P77398 with c3lu1C

Job Description P77398
Confidence 100.00% Date Thu Jan 5 12:28:36 GMT 2012

Rank 32 Aligned Residues 321

% Identity 23% Template c3lu1C_

PDB info PDB header:isomerase Chain: C: PDB Molecule:wbgu; PDBTitle: crystal structure analysis of wbgu: a udp-galnac 4-epimerase

Resolution 2.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.											360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.
Query Sequence	S	R	L	N	S	Q	P	A	C	T	A	R	R	R	T	R	V	L	I	L	G	V	N	G	F	I	G	N	H	L	T	E	R	L	L	R	E	D	H	Y	E	V	Y	G	L	D	I	G	S	D	A	I	S	R	F	L	N	H	.	.	.	.	.	.	.	.	.	.	P	H	F	H	F	V	E	G	D	I	S	I
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.																				.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.
Template Sequence	S	R	Y	E	E	I	T	Q	Q	L	I	F	S	P	K	T	W	L	I	T	G	V	A	G	F	I	G	S	N	L	L	E	K	L	L	K	L	N	.	Q	V	V	I	G	L	D	N	F	S	T	G	H	Q	Y	N	L	D	E	V	K	T	L	V	S	T	E	Q	W	S	R	F	C	F	I	E	G	D	I	R	D
Template Known Secondary structure													S								T	T	T	S													T	T	.									S	S	S													S						T	T								T	T
Template Predicted Secondary structure																																							.
Template SS confidence
	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.

	372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.		.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence	H	S	E	W	I	E	Y	H	V	K	K	C	D	V	V	L	P	L	V	A	I	A	T	P	I	E	Y	T	R	N	P	L	R	V	F	E	L	D	F	E	E	N	L	R	I	I	R	Y	C	V	K	Y	R	.	K	R	I	I	F	P	S	T	S	E	V	Y	G	M	C	S	D	K	Y	F	D	E	D	H	S	N
Query Conservation																																																						.
Alig confidence							.																																															.
Template Conservation							.
Template Sequence	L	T	T	C	E	Q	.	V	M	K	G	V	D	H	V	L	H	Q	A	A	L	G	S	V	P	R	S	I	V	D	P	I	T	T	N	A	T	N	I	T	G	F	L	N	I	L	H	A	A	K	N	A	Q	V	Q	S	F	T	Y	A	A	S	S	S	T	Y	G	D	H	P	A	L	P	K	V	E	E	N	I	G
Template Known Secondary structure							.	T	T	T	T		S																										T														T		S								G	G	G	G	T	T				S	S	B		T	T
Template Predicted Secondary structure							.
Template SS confidence
	82	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160

	451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
Predicted Secondary structure
Query SS confidence
Query Sequence	L	I	V	G	P	V	N	K	P	R	W	I	Y	S	V	S	K	Q	L	L	D	R	V	I	W	A	Y	G	E	K	E	G	L	Q	F	T	L	F	R	P	F	N	W	M	G	P	R	L	D	N	L	N	A	A	R	I	G	S	S	R	A	I	T	Q	L	I	L	N	L	V	E	G	S	P	I	K	L	I	D	G
Query Conservation
Alig confidence	.	.	.	.	.	.	.																																														.	.	.	.
Template Conservation	.	.	.	.	.	.	.																																														.	.	.	.
Template Sequence	.	.	.	.	.	.	.	N	P	L	S	P	Y	A	V	T	K	Y	V	N	E	I	Y	A	Q	V	Y	A	R	T	Y	G	F	K	T	I	G	L	R	Y	F	N	V	F	G	R	R	Q	D	P	N	G	.	.	.	.	A	Y	A	A	V	I	P	K	W	T	A	A	M	L	K	G	D	D	V	Y	I	N	G	D
Template Known Secondary structure	.	.	.	.	.	.	.				S																															S			S	T	T					S	.	.	.	.	T	T														T							S
Template Predicted Secondary structure	.	.	.	.	.	.	.																																														.	.	.	.
Template SS confidence
								161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.					.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.

	531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610
Predicted Secondary structure
Query SS confidence
Query Sequence	G	K	Q	K	R	C	F	T	D	I	R	D	G	I	E	A	L	Y	R	I	I	E	N	A	G	N	R	C	D	G	E	I	I	N	I	G	N	P	E	N	E	A	S	I	E	E	L	G	E	M	L	L	A	S	F	E	K	H	P	L	R	H	H	F	P	P	F	A	G	F	R	V	V	E	S	S	S	Y	Y	G
Query Conservation
Alig confidence																										.															.																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.															.																													.	.	.	.	.	.	.	.	.	.	.
Template Sequence	G	E	T	S	R	D	F	C	Y	I	D	N	V	I	Q	M	N	I	L	S	A	L	A	K	D	.	S	A	K	D	N	I	Y	N	V	A	V	G	D	R	.	T	T	L	N	E	L	S	G	Y	I	Y	D	E	L	N	L	I	H	H	I	K	Y	R	E	F	R	S	G	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure	S																					T			G	.	G	G		S						S		S			.																T	T	T									T	T	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																										.															.																													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.

	611	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	G	Y	Q	D	V	E	H	R	K	P	S	I	R	N	A	H	R	C	L	D	W	E	P	K	I	D	M	Q	E	T	I	D	E	T	L	D	F	F	L	R	T
Query Conservation
Alig confidence	.	.	.	.
Template Conservation	.	.	.	.
Template Sequence	.	.	.	.	D	V	R	H	S	Q	A	D	V	T	K	A	I	D	L	L	K	Y	R	P	N	I	K	I	R	E	G	L	R	L	S	M	P	W	Y	V	R	F
Template Known Secondary structure	.	.	.	.			S	B			B
Template Predicted Secondary structure	.	.	.	.
Template SS confidence
					302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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