Job Description P77398 Confidence 100.00% Date Thu Jan 5 12:28:36 GMT 2012 Rank 83 Aligned Residues 272 % Identity 17% Template c3iusB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: the structure of a functionally unknown conserved protein2 from silicibacter pomeroyi dss Resolution 1.66 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	R	V	L	I	L	G	V	N	G	F	I	G	N	H	L	T	E	R	L	L	R	E	D	H	Y	E	V	Y	G	L	D	I	G	S	D	A	I	S	R	F	L	N	H	P	H	F	H	F	V	E	G	D	I	S	I	H	S	E	W	I	E	Y	H	V	K	K	C	D	V	V	L	P	L	V	A	I	A	T
Query Conservation
Alig confidence											.																.																					.											.	.	.	.	.	.	.	.	.
Template Conservation											.																.																					.											.	.	.	.	.	.	.	.	.
Template Sequence		T	G	T	L	L	S	F	G	H	.	G	Y	T	A	R	V	L	S	R	A	L	A	P	Q	G	.	W	R	I	I	G	T	S	R	N	P	D	Q	X	E	A	I	R	A	S	G	.	A	E	P	L	L	W	P	G	E	E	.	.	.	.	.	.	.	.	.	P	S	L	D	G	V	T	H	L	L	I	S	T	A
Template Known Secondary structure									T		.												G	G	G	T	.								S		G	G	G							T	T	.	S					T	T	T	S		.	.	.	.	.	.	.	.	.				T	T
Template Predicted Secondary structure											.																.																					.											.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.										.	.	.	.	60	.	.	.	.	.	.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.		.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		P	I	E	Y	T	R	N	P	L	R	V	F	E	L	D	F	E	E	N	L	R	I	I	R	Y	C	V	K	Y	R	.	K	R	I	I	F	P	S	T	S	E	V	Y	G	M	C	S	D	K	Y	F	D	E	D	H	S	N	L	I	V	G	P	V	N	K	P	R	W	I	Y	S	V	S	K	Q	L	L	D	R	V
Query Conservation																																.
Alig confidence								.	.	.	.	.	.	.	.																	.																											.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.
Template Sequence		P	D	S	G	G	D	.	.	.	.	.	.	.	.	P	V	L	A	A	L	G	D	Q	I	A	A	R	A	A	Q	F	R	W	V	G	Y	L	S	T	T	A	V	Y	G	D	H	D	G	A	W	V	D	E	T	T	P	L	.	.	.	.	.	.	.	T	P	T	A	A	R	G	R	W	R	V	X	A	E	Q	Q
Template Known Secondary structure			B	T	T	B		.	.	.	.	.	.	.	.													T	G	G	G		S								G	G	G	S				T	T					T	T	S			.	.	.	.	.	.	.				S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.
Template SS confidence
		70	.	.	.	.	.									.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.								.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	W	A	Y	G	E	K	E	G	L	Q	F	T	L	F	R	P	F	N	W	M	G	P	R	L	D	N	L	N	A	A	R	I	G	S	S	R	A	I	T	Q	L	I	L	N	L	V	E	G	S	P	I	K	L	I	D	G	G	K	Q	K	R	C	F	T	D	I	R	D	G	I	E	A	L	Y	R	I	I	E	N
Query Conservation
Alig confidence							.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	Q	A	V	P	.	.	.	N	L	P	L	H	V	F	R	L	A	G	I	Y	G	P	G	R	G	P	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	I	R	R	I	I	K	P	G	Q	V	F	S	R	I	H	V	E	D	I	A	Q	V	L	A	A	S	X	A	R
Template Known Secondary structure				T	S	T	.	.	.	T													B	T	T	B	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T			B																		S
Template Predicted Secondary structure							.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		135	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.																						160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		554	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	N	R	C	D	G	E	I	I	N	I	G	N	P	E	N	E	A	S	I	E	E	L	G	E	M	L	L	A	S	F	E	K	H	P	L	R	H	H	F	P	P	F	A	G	F	R	V	V	E	S	S	S	Y	Y	G	K	G	Y	Q	D	V	E	H	R	K	P	S	I	R	N	A	H	R	C	L	D	W	E
Query Conservation
Alig confidence		.	.	.															.																																						.	.	.	.	.	.	.
Template Conservation		.	.	.															.																																						.	.	.	.	.	.	.
Template Sequence		.	.	.	P	D	P	G	A	V	Y	N	V	C	D	D	E	P	.	V	P	P	Q	D	V	I	A	Y	A	A	E	L	Q	G	L	P	L	P	P	A	V	D	F	D	K	A	D	L	T	P	X	A	R	S	F	Y	.	.	.	.	.	.	.	S	E	N	K	R	V	R	N	D	R	I	K	E	E	L	G	V	R
Template Known Secondary structure		.	.	.			T	T								S			.	B													T	T									G	G	G											T	.	.	.	.	.	.	.	T													T	T
Template Predicted Secondary structure		.	.	.															.																																						.	.	.	.	.	.	.
Template SS confidence
					196	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.								.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		634	.	.		.	.	.	640	.	.	.	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		P	K	I	.	D	M	Q	E	T	I	D	E	T	L	D	F
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence		L	K	Y	P	N	Y	R	V	G	L	E	A	L	Q	A	D
Template Known Secondary structure			S			S
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions