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Job DescriptionP77398
Confidence98.12%DateThu Jan 5 12:28:36 GMT 2012
Rank331Aligned Residues161
% Identity11%Templatec3fi9B_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of malate dehydrogenase from porphyromonas2 gingivalis
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   311........320.........330.........340. ........350...... ...360.........370.........380.
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Query Sequence  TARRRTRVLILGVNGFIGNHLTERLLREDHY. EVYGLDIGSDAISRF. . . . . . . . LNHPHFHFVEGDISIHSEWIEYHVK
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Template Sequence  SYLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSD. . . . . . . . IKEALT
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SSSTTSTT

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   2.......10.........20.........30.........40.........50.........60....... ..70...
 
   382.......390.........400.........410.........420.... .. ...430.........440.........450.........
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Query Sequence  KCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR. KR. IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKP
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Template Sequence  DAKYIVSSGG. . . . . . . . . TREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF. . . . . . . . . NPADITGLVTLIYSGLKP
Template Known Secondary structure  T


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   74.....80... ......90.........100.........110....... ..120.........130.....
 
   460.........470.........480.........490.......
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Query Sequence  RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPR
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Template Sequence  SQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH
Template Known Secondary structure  GG

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GGG


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   143......150.........160.........170.........180
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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