Phyre 2 alignment of P77398 with c2vrcD

Job Description P77398
Confidence 99.94% Date Thu Jan 5 12:28:36 GMT 2012

Rank 100 Aligned Residues 274

% Identity 11% Template c2vrcD_

PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:triphenylmethane reductase; PDBTitle: crystal structure of the citrobacter sp. triphenylmethane2 reductase complexed with nadp(h)

Resolution 2.5 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340		.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence	T	R	V	L	I	L	G	V	N	G	F	I	G	N	H	L	T	E	R	L	L	R	E	D	H	.	Y	E	V	Y	G	L	D	I	G	S	D	A	I	S	R	F	L	N	H	P	H	F	H	F	V	E	G	D	I	S	I	H	S	E	W	I	E	Y	H	V	K	K	C	D	V	V	L	P	L	V	A	I	A	T
Query Conservation																										.
Alig confidence																										.																					.																	.
Template Conservation																																															.																	.
Template Sequence	F	S	I	A	V	T	G	A	T	G	Q	L	G	G	L	V	I	Q	H	L	X	A	A	V	P	A	S	Q	I	I	A	I	V	R	N	V	E	K	A	S	T	L	A	D	Q	G	.	V	E	V	R	H	G	D	Y	N	Q	P	E	S	L	Q	K	.	A	F	A	G	V	S	K	L	L	F	I	S	G	P	H	Y
Template Known Secondary structure							S	T	T	S														S		G	G	G						S	S	G	G	G	G						T	T	.								T	T		G	G	G				.			T	T		S
Template Predicted Secondary structure																																															.																	.
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.

	395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.		.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence	P	I	E	Y	T	R	N	P	L	R	V	F	E	L	D	F	E	E	N	L	R	I	I	R	Y	C	V	K	Y	R	.	K	R	I	I	F	P	S	T	S	E	V	Y	G	M	C	S	D	K	Y	F	D	E	D	H	S	N	L	I	V	G	P	V	N	K	P	R	W	I	Y	S	V	S	K	Q	L	L	D	R	V
Query Conservation																															.
Alig confidence			.	.	.	.	.	.	.	.	.	.																			.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	D	N	.	.	.	.	.	.	.	.	.	.	T	L	L	I	V	Q	H	A	N	V	V	K	A	A	R	D	A	G	V	K	H	I	A	Y	T	G	Y	A	F	A	E	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	I	I	P	L	A	H	V	H	L	A	T	E	Y	A
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.																	T	T		S								T	T	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	79	80											.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.																						.	.	.	.	.	.	.	120	.	.	.	.	.	.	.

	474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	W	A	Y	G	E	K	E	G	L	Q	F	T	L	F	R	P	F	N	W	M	G	P	R	L	D	N	L	N	A	A	R	I	G	S	S	R	A	I	T	Q	L	I	L	N	L	V	E	G	S	P	I	K	L	I	D	G	G	K	Q	K	R	C	F	T	D	I	R	D	G	I	E	A	L	Y	R	I	I	E	N
Query Conservation
Alig confidence						.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	T	R	T	T	N	.	.	.	.	I	P	Y	T	F	L	R	N	A	L	Y	T	D	F	F	V	N	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	A	S	T	E	S	G	A	I	V	T	N	A	G	S	G	I	V	N	S	V	T	R	N	E	L	A	L	A	A	A	T	V	L	T	E
Template Known Secondary structure			T	T	T	.	.	.	.											B	S	T	T	T	S	S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S					S		T	T			B			B														T	S
Template Predicted Secondary structure						.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	128	.	130	.	.					.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.																.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.

	554	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.										.	.	.	620	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.
Query Sequence	A	G	N	R	C	D	G	E	I	I	N	I	G	N	P	E	N	E	A	S	I	E	E	L	G	E	M	L	L	A	S	F	E	K	H	P	L	R	H	H	F	P	P	F	A	G	F	R	V	V	E	S	S	S	Y	Y	G	K	G	Y	Q	D	V	.	.	.	.	.	.	.	.	.	E	H	R	K	P	S	I	R
Query Conservation																																																																.	.	.	.	.	.	.	.	.
Alig confidence			.	.														.																																														.	.	.	.	.	.	.	.	.
Template Conservation			.	.														.
Template Sequence	E	G	.	.	H	E	N	K	T	Y	N	L	V	S	N	Q	P	.	W	T	F	D	E	L	A	Q	I	L	S	E	V	S	G	K	K	V	V	H	Q	P	V	S	F	E	E	E	K	N	F	X	V	N	A	G	V	P	E	P	F	A	E	I	T	A	A	I	Y	D	A	I	S	K	G	E	A	S	K	T	S	D
Template Known Secondary structure	S	S	.	.		T	T								S	S		.	B														S	S																			T	T																	T	T	T	T	T					S
Template Predicted Secondary structure			.	.														.
Template SS confidence
	189	190			.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.

	625	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	A	H	R	C	L	D	W	E	P	K	I	D	M	Q	E	T	I	D	E	T	L
Query Conservation
Alig confidence								.				.
Template Conservation								.				.
Template Sequence	D	L	Q	K	L	I	G	.	S	L	T	.	P	L	K	E	T	V	K	Q	A	L
Template Known Secondary structure								.	S			.								T	T
Template Predicted Secondary structure								.				.
Template SS confidence
	266	.	.	.	270	.	.		.	.	.		.	.	.	.	280	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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