Job Description P77398 Confidence 96.90% Date Thu Jan 5 12:28:36 GMT 2012 Rank 399 Aligned Residues 121 % Identity 18% Template c2ldxA_ PDB info PDB header:oxidoreductase(choh(d)-nad(a)) Chain: A: PDB Molecule:apo-lactate dehydrogenase; PDBTitle: characterization of the antigenic sites on the refined 3-2 angstroms resolution structure of mouse testicular lactate3 dehydrogenase c4 Resolution 2.96 Å

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		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.									360	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.																			.	.	.	.	.	.	.	.
Query SS confidence																																													.	.																			.	.	.	.	.	.	.	.
Query Sequence		V	Q	G	S	R	L	N	S	Q	P	A	C	T	A	R	R	R	T	R	V	L	I	L	G	V	N	G	F	I	G	N	H	L	T	E	R	L	L	R	E	D	H	Y	.	.	E	V	Y	G	L	D	I	G	S	D	A	I	S	R	F	L	N	H	.	.	.	.	.	.	.	.	P	H	F	H	F	V	E	G	D
Query Conservation																																													.	.																			.	.	.	.	.	.	.	.
Alig confidence																		.									.																.		.	.																			.	.	.	.	.	.	.	.
Template Conservation																		.									.																.
Template Sequence		K	E	Q	L	I	Q	N	L	V	P	E	D	K	L	S	R	.	C	K	I	T	V	V	G	V	.	G	D	V	G	M	A	C	A	I	S	I	L	L	K	G	.	L	A	D	E	L	A	L	V	D	A	D	T	D	K	L	R	G	E	A	L	D	L	Q	H	G	S	L	F	L	S	T	P	K	I	V	F	G	K
Template Known Secondary structure										S	S							.									.	S												T	T	T	.	S		S							S															T	T	T	T		S								S
Template Predicted Secondary structure																		.									.																.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.		20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.			.	.	.	.	.	430	.
Predicted Secondary structure																																																										.	.
Query SS confidence																																																										.	.
Query Sequence		I	S	I	H	S	E	W	I	E	Y	H	V	K	K	C	D	V	V	L	P	L	V	A	I	A	T	P	I	E	Y	T	R	N	P	L	R	V	F	E	L	D	F	E	E	N	L	R	I	I	R	Y	C	V	K	Y	R	.	.	K	R	I	I	F	P	S
Query Conservation																																																										.	.
Alig confidence			.	.	.	.	.	.	.																										.	.																						.	.
Template Conservation			.	.	.	.	.	.	.																										.	.
Template Sequence		D	.	.	.	.	.	.	.	Y	N	V	S	A	N	S	K	L	V	I	I	T	A	G	A	R	M	V	S	G	Q	T	R	L	.	.	D	L	L	Q	R	N	V	A	I	M	K	A	I	V	P	G	V	I	Q	N	S	P	D	C	K	I	I	V	V	T
Template Known Secondary structure		S	.	.	.	.	.	.	.	G	G	G	G	T	T									S					T	T	T		S	S	.	.		T	T											T	T	T					S	T	T							S
Template Predicted Secondary structure			.	.	.	.	.	.	.																										.	.
Template SS confidence
		81								.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions