Job Description P77398 Confidence 99.45% Date Thu Jan 5 12:28:36 GMT 2012 Rank 121 Aligned Residues 163 % Identity 15% Template c2hlpB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of the e267r mutant of a halophilic2 malate dehydrogenase in the apo form Resolution 2.59 Å

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		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.											.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure																												.												.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.												.	.	.	.	.	.	.	.	.	.
Query Sequence		T	R	V	L	I	L	G	V	N	G	F	I	G	N	H	L	T	E	R	L	L	R	E	D	H	Y	.	E	V	Y	G	L	D	I	G	S	D	A	.	.	.	.	.	.	.	.	.	.	I	S	R	F	L	N	H	P	H	F	H	F	V	E	G	D	I	S	I	H	S	E	W	I	E	Y	H	V	K	K	C	D
Query Conservation																												.												.	.	.	.	.	.	.	.	.	.
Alig confidence																												.												.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.
Template Sequence		T	K	V	S	V	V	G	A	A	G	T	V	G	A	A	A	G	Y	N	I	A	L	R	D	I	A	D	E	V	V	F	V	D	I	P	D	K	E	D	D	T	V	G	Q	A	A	D	T	N	H	G	I	A	Y	D	S	N	T	R	V	R	Q	G	G	.	.	.	.	.	.	.	.	Y	E	D	T	A	G	S	D
Template Known Secondary structure								T	T	T	S													T	T			S								G	G	G																T	T	T										.	.	.	.	.	.	.	.	G	G	G	G	T	T		S
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.									.	.	.	.	90	.	.	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.		.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		V	V	L	P	L	V	A	I	A	T	P	I	E	Y	T	R	N	P	L	R	V	F	E	L	D	F	E	E	N	L	R	I	I	R	Y	C	V	K	Y	R	.	K	R	I	I	F	P	S	T	S	E	V	Y	G	M	C	S	D	K	Y	F	D	E	D	H	S	N	L	I	V	G	P	V	N	K	P	R	W	I	Y
Query Conservation																																										.
Alig confidence															.	.																										.															.	.	.	.	.	.	.	.	.
Template Conservation															.	.																																									.	.	.	.	.	.	.	.	.
Template Sequence		V	V	V	I	T	A	G	I	P	R	Q	P	G	.	.	Q	T	R	I	D	L	A	G	D	N	A	P	I	M	E	D	I	Q	S	S	L	D	E	H	N	D	D	Y	I	S	L	T	T	S	N	P	V	D	L	L	.	.	.	.	.	.	.	.	.	N	R	H	L	Y	E	A	G	D	R	S	R	E	Q	V	I
Template Known Secondary structure													T	T	.	.																							T	T		S	S								S	S					.	.	.	.	.	.	.	.	.							T	S		S		T	T	T
Template Predicted Secondary structure															.	.																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.										.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	S	K	Q	L	L	D	R	V	I	W	A	Y	G	E	K	E	G	L	Q	F	T	L	F	R	P	F	N	W	M	G	P	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	F	G	G	R	L	D	S	A	R	F	R	Y	V	L	S	E	E	F	D	A	P	V	Q	N	V	E	G	T	I	L	G	E	H
Template Known Secondary structure																					T			G	G	G									S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions