Job Description P77398 Confidence 100.00% Date Thu Jan 5 12:28:36 GMT 2012 Rank 84 Aligned Residues 270 % Identity 18% Template c2ggsB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:273aa long hypothetical dtdp-4-dehydrorhamnose PDBTitle: crystal structure of hypothetical dtdp-4-dehydrorhamnose2 reductase from sulfolobus tokodaii Resolution 1.70 Å

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		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.		.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		T	R	V	L	I	L	G	V	N	G	F	I	G	N	H	L	T	E	R	L	L	R	E	D	H	Y	E	V	Y	G	L	D	I	G	S	D	A	I	S	R	F	L	N	H	P	H	F	H	F	V	E	G	D	I	S	I	H	S	E	W	I	E	Y	H	V	K	.	K	C	D	V	V	L	P	L	V	A	I	A	T
Query Conservation																																																																				.
Alig confidence																										.											.	.	.	.	.	.	.	.	.	.																						.
Template Conservation																										.											.	.	.	.	.	.	.	.	.	.
Template Sequence		M	R	T	L	I	T	G	A	S	G	Q	L	G	I	E	L	S	R	L	L	S	E	R	H	.	E	V	I	K	V	Y	N	S	S	E	.	.	.	.	.	.	.	.	.	.	I	Q	G	G	Y	K	L	D	L	T	D	F	P	R	L	E	D	F	I	I	K	K	R	P	D	V	I	I	N	A	A	A	M	T	D
Template Known Secondary structure								S	T	T	S											T	T	T	S	.							S	S	S		.	.	.	.	.	.	.	.	.	.		S	S	B					T	T															S
Template Predicted Secondary structure																										.											.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.											.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	E	Y	T	R	N	P	L	R	V	F	E	L	D	F	E	E	N	L	R	I	I	R	Y	C	V	K	Y	R	K	R	I	I	F	P	S	T	S	E	V	Y	G	M	C	S	D	K	Y	F	D	E	D	H	S	N	L	I	V	G	P	V	N	K	P	R	W	I	Y	S	V	S	K	Q	L	L	D	R	V	I
Query Conservation
Alig confidence																																															.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.
Template Sequence		V	D	K	C	E	I	E	K	E	K	A	Y	K	I	N	A	E	A	V	R	H	I	V	R	A	G	K	V	I	D	S	Y	I	V	H	I	S	T	D	Y	V	F	D	G	E	.	.	.	.	.	.	.	.	K	G	N	Y	K	E	E	D	I	P	N	P	I	N	Y	Y	G	L	S	K	L	L	G	E	T	F	A
Template Known Secondary structure																	T													T	T									G	G	G	S		S	S	.	.	.	.	.	.	.	.	S		S	B		T	T	S					S	S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.									.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	A	Y	G	E	K	E	G	L	Q	F	T	L	F	R	P	F	N	W	M	G	P	R	L	D	N	L	N	A	A	R	I	G	S	S	R	A	I	T	Q	L	I	L	N	L	V	E	G	S	P	I	K	L	I	D	G	G	K	Q	K	R	C	F	T	D	I	R	D	G	I	E	A	L	Y	R	I	I	E	N	A
Query Conservation
Alig confidence		.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Conservation		.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Sequence		.	.	.	.	.	.	L	Q	D	D	S	L	I	I	R	T	S	G	I	F	R	N	K	G	F	.	.	.	.	.	.	.	.	.	.	.	.	P	I	Y	V	Y	K	T	L	K	E	G	K	T	V	.	.	.	F	A	F	K	G	Y	Y	S	P	I	S	A	R	K	L	A	S	A	I	L	E	L	L	E	L	R
Template Known Secondary structure		.	.	.	.	.	.			T	T											S	S	S	S		.	.	.	.	.	.	.	.	.	.	.	.									T	T	T				.	.	.				S																					T	T
Template Predicted Secondary structure		.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template SS confidence
								142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160													.	.	.	.	.	.	.	.	.	170	.	.	.	.				.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		555	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	R	C	D	G	E	I	I	N	I	G	N	P	E	N	E	A	S	I	E	E	L	G	E	M	L	L	A	S	F	E	K	H	P	L	R	H	H	F	P	P	F	A	G	F	R	V	V	E	S	S	S	Y	Y	G	K	G	Y	Q	D	V	E	H	R	K	P	S	I	R	N	A	H	R	C	L	D	W	E	P
Query Conservation
Alig confidence			.	.	.	.											.	.																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.											.	.																													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	.	.	.	.	T	G	I	I	H	V	A	G	E	R	.	.	I	S	R	F	E	L	A	L	K	I	K	E	K	F	N	L	P	G	E	V	K	E	V	D	E	V	R	G	.	.	.	.	.	.	.	.	.	.	.	W	I	A	K	R	P	Y	D	S	S	L	D	S	S	R	A	R	K	I	L	S	T	D	F
Template Known Secondary structure			.	.	.	.											.	.																								S	S		T	T	.	.	.	.	.	.	.	.	.	.	.			S				S	B			B											S
Template Predicted Secondary structure			.	.	.	.											.	.																													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		201					.	.	.	.	.	.	.	.	210	.			.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.												240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		635	.	.	.	.	640	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	D	M	Q	E	T	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	T	L	D	L	D	G	M
Template Known Secondary structure		S	S			G	G	G
Template Predicted Secondary structure
Template SS confidence
		264	.	.	.	.	.	270	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions