Phyre 2 alignment of P77398 with c2c20D

Job Description P77398
Confidence 100.00% Date Thu Jan 5 12:28:36 GMT 2012

Rank 41 Aligned Residues 317

% Identity 20% Template c2c20D_

PDB info PDB header:isomerase Chain: D: PDB Molecule:udp-glucose 4-epimerase; PDBTitle: crystal structure of udp-glucose 4-epimerase

Resolution 2.7 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.		.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence	R	V	L	I	L	G	V	N	G	F	I	G	N	H	L	T	E	R	L	L	R	E	D	H	Y	E	V	Y	G	L	D	I	G	S	D	A	I	S	R	F	L	N	H	P	H	F	H	F	V	E	G	D	I	S	I	H	S	E	W	I	E	Y	H	V	K	.	K	C	D	V	V	L	P	L	V	A	I	A	T	P
Query Conservation																																																																		.
Alig confidence																								.																				.																						.
Template Conservation																								.																				.
Template Sequence	S	I	L	I	C	G	G	A	G	Y	I	G	S	H	A	V	K	K	L	V	D	E	G	.	L	S	V	V	V	V	D	N	L	Q	T	G	H	E	D	A	I	T	E	.	G	A	K	F	Y	N	G	D	L	R	D	K	A	F	L	R	D	V	F	T	Q	E	N	I	E	A	V	M	H	F	A	A	D	S	L	V
Template Known Secondary structure						T	T	T	S													T	T	.										S	S	S		G	G	G	S		S	.	S	S							T	T											T	S
Template Predicted Secondary structure																								.																				.
Template SS confidence
	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80

	396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.		.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence	I	E	Y	T	R	N	P	L	R	V	F	E	L	D	F	E	E	N	L	R	I	I	R	Y	C	V	K	Y	R	.	K	R	I	I	F	P	S	T	S	E	V	Y	G	M	C	S	D	K	Y	F	D	E	D	H	S	N	L	I	V	G	P	V	N	K	P	R	W	I	Y	S	V	S	K	Q	L	L	D	R	V	I
Query Conservation																														.
Alig confidence																														.																												.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.
Template Sequence	G	V	S	M	E	K	P	L	Q	Y	Y	N	N	N	V	Y	G	A	L	C	L	L	E	V	M	D	E	F	K	V	D	K	F	I	F	S	S	T	A	A	T	Y	G	E	V	D	V	D	L	I	T	E	E	T	M	T	N	.	.	.	.	.	.	.	P	T	N	T	Y	G	E	T	K	L	A	I	E	K	M	L
Template Known Secondary structure																													T										G	G	G	G						S	S	B		T	T	S				.	.	.	.	.	.	.			S
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.
Template SS confidence
	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.								.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.

	475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500		.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.		.	.	.	.	.	.	.	530	.							.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
Predicted Secondary structure																											.																							.										.	.	.	.	.	.
Query SS confidence																											.																							.										.	.	.	.	.	.
Query Sequence	W	A	Y	G	E	K	E	G	L	Q	F	T	L	F	R	P	F	N	W	M	G	P	R	L	D	N	.	L	N	A	A	R	I	G	S	S	R	A	I	T	Q	L	I	L	N	L	V	E	G	.	S	P	I	K	L	I	D	G	G	.	.	.	.	.	.	K	Q	K	R	C	F	T	D	I	R	D	G	I	E	A
Query Conservation																											.																							.										.	.	.	.	.	.
Alig confidence																											.																							.										.	.	.	.	.	.
Template Conservation
Template Sequence	H	W	Y	S	Q	A	S	N	L	R	Y	K	I	F	R	Y	F	N	V	A	G	A	T	P	N	G	I	I	G	E	D	H	R	P	E	T	H	L	I	P	L	V	L	Q	V	A	L	G	Q	R	E	K	I	M	M	F	G	D	D	Y	N	T	P	D	G	T	C	I	R	D	Y	I	H	V	E	D	L	V	A	A
Template Known Secondary structure						T	S	S									S							T	T		S	S					S	S			S										T	T	S	S	S							S		S	S	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
	154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.

	547	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	Y	R	I	I	E	N	A	G	N	R	C	D	G	E	I	I	N	I	G	N	P	E	N	E	A	S	I	E	E	L	G	E	M	L	L	A	S	F	E	K	H	P	L	R	H	H	F	P	P	F	A	G	F	R	V	V	E	S	S	S	Y	Y	G	K	G	Y	Q	D	V	E	H	R	K	P	S	I	R	N	A
Query Conservation
Alig confidence																									.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	H	F	L	G	L	K	D	L	Q	N	G	G	E	S	D	F	Y	N	L	G	N	G	N	G	.	F	S	V	K	E	I	V	D	A	V	R	E	V	T	N	H	E	I	P	A	E	V	A	P	R	R	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	A	R	L	V	A	S	S	Q	K	A
Template Known Secondary structure										T	T											T	T		.															T												S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	B			B
Template Predicted Secondary structure																									.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.																.	.	.	.	290	.	.	.	.	.	.	.

	627	.	.	630	.	.	.	.	.		.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence	H	R	C	L	D	W	E	P	K	.	I	D	M	Q	E	T	I	D	E	T	L	D	F	F	L	R	T	V	D	L	T	D	K
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence	K	E	K	L	G	W	D	P	R	Y	V	N	V	K	T	I	I	E	H	A	W	N	W	H	Q	K	Q	P	N	G	Y	E	K
Template Known Secondary structure									S																			T	T
Template Predicted Secondary structure
Template SS confidence
	298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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