Job Description P19323 Confidence 99.05% Date Thu Jan 5 11:37:18 GMT 2012 Rank 97 Aligned Residues 210 % Identity 16% Template c3u5zM_ PDB info PDB header:dna binding protein/dna Chain: M: PDB Molecule:dna polymerase accessory protein 44; PDBTitle: structure of t4 bacteriophage clamp loader bound to the t4 clamp,2 primer-template dna, and atp analog Resolution 3.50 Å

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		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	E	N	L	A	L	T	E	Q	L	N	N	V	D	S	E	F	G	E	I	I	G	R	S	E	A	M	Y	S	V	L	K	Q	V	E	M	V	A	Q	S	D	S	T	V	L	I	L	G	E	T	G	T	G	K	E	L	I	A	R	A	I	H	N	L	S	G	R	N	N	R	R	M	V	K	M	N	C	A	A
Query Conservation
Alig confidence																		.																					.																												.	.	.
Template Conservation																		.																					.																												.	.	.
Template Sequence		V	N	E	K	E	H	I	L	E	Q	K	Y	R	P	S	T	.	I	D	E	C	I	L	P	A	F	D	K	E	T	F	K	S	I	T	S	K	.	G	K	I	P	H	I	I	L	H	S	P	S	P	G	T	G	K	T	T	V	A	K	A	L	C	H	D	.	.	.	V	N	A	D	M	M	F	V	N	G	S	D
Template Known Secondary structure					S			S	S	T	T	T	S			S	S	.	T	T	T	S																	.	S	S									S	S	S		S	S												.	.	.	T	T								G	G	G
Template Predicted Secondary structure																		.																					.																												.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.				.	.	.	70	.	.	.	.	.	.	.	.
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
Predicted Secondary structure
Query SS confidence
Query Sequence		M	P	A	G	L	L	E	S	D	L	F	G	H	E	R	G	A	F	T	G	A	S	A	Q	R	I	G	R	F	E	L	A	D	K	S	S	L	F	L	D	E	V	G	D	M	P	L	E	L	Q	P	K	L	L	R	V	L	Q	E	Q	E	F	E	R	L	G	S	N	K	I	I	Q	T	D	V	R	L	I	A	A
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.
Template Sequence		C	K	I	D	F	V	R	G	P	L	.	.	.	.	.	.	.	.	.	.	.	T	N	F	A	S	A	A	S	F	D	G	R	Q	K	V	I	V	I	D	E	F	D	R	S	G	L	A	E	S	Q	R	H	L	R	S	F	M	E	A	Y	.	.	.	.	.	.	.	.	.	.	S	S	N	C	S	I	I	I	T
Template Known Secondary structure									T			.	.	.	.	.	.	.	.	.	.	.						S			T	T										S				G	G	G														T	.	.	.	.	.	.	.	.	.	.	T	T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.												.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.											.	130	.	.	.	.	.	.	.
		521	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	R	D	L	K	K	M	V	A	D	R	E	F	R	S	D	L	Y	Y	R	L	N	V	F	P	I	H	L	P	P	L	R	E	R	P	E	D	I	P	L	L	A	K	A	F	T	F	K	I	A	R	R	L	G	R	N	I	D	S	I	P	A	E	T	L	R	T	L	S	N	M	E	W	P	G	N	V	R	E
Query Conservation
Alig confidence					.	.	.	.	.	.	.												.	.											.	.
Template Conservation					.	.	.	.	.	.	.												.	.											.	.
Template Sequence		A	N	N	.	.	.	.	.	.	.	I	D	G	I	I	K	P	L	Q	S	R	.	.	C	R	V	I	T	F	G	Q	P	T	.	.	D	E	D	K	I	E	M	M	K	Q	M	I	R	R	L	T	E	I	C	K	H	E	G	I	A	I	A	D	M	K	V	V	A	A	L	V	K	K	N	F	P	D	F	R	K
Template Known Secondary structure			S		.	.	.	.	.	.	.	G	G	G	S								.	.	S					T	T				.	.																							T				S		S										T		S
Template Predicted Secondary structure					.	.	.	.	.	.	.												.	.											.	.
Template SS confidence
		138	.	140								.	.	.	.	.	.	.	.	.	150	.			.	.	.	.	.	.	.	.	160	.			.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		601	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	N	V	I	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	I	G	E	L	D	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions