Job Description P19323 Confidence 95.81% Date Thu Jan 5 11:37:18 GMT 2012 Rank 155 Aligned Residues 162 % Identity 9% Template c3qp1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:cvir transcriptional regulator; PDBTitle: crystal structure of cvir ligand-binding domain bound to the native2 ligand c6-hsl Resolution 1.55 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.				.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.									.	.
Query SS confidence																																															.	.	.									.	.
Query Sequence		R	D	N	F	R	I	L	V	A	I	T	N	A	V	L	S	R	L	D	M	D	E	L	V	S	E	V	A	K	E	I	H	Y	Y	F	D	I	D	D	I	S	I	V	L	R	.	.	.	S	H	R	K	N	K	L	N	.	.	I	Y	S	T	H	Y	L	D	K	Q	H	P	A	H	E	Q	S	E	V	D	E	A
Query Conservation																																															.	.	.									.	.
Alig confidence																											.																				.	.	.									.	.
Template Conservation																											.
Template Sequence		A	S	Q	Q	W	T	L	L	E	W	I	H	M	A	G	H	I	E	T	E	N	E	L	K	A	.	F	L	D	Q	V	L	S	Q	A	P	S	E	R	L	L	L	A	L	G	R	L	N	N	Q	N	Q	I	Q	R	L	E	R	V	L	N	V	S	Y	P	S	D	W	L	D	Q	Y	M	K	E	N	Y	A	Q	H
Template Known Secondary structure																T	T			S							.							T	T	S	S		S											T	T	S											S	S	S											T	T	G	G	G	T
Template Predicted Secondary structure																											.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	L	T	E	R	V	F	K	S	K	E	M	L	L	I	N	L	H	E	R	D	D	L	A	P	Y	E	R	M	L	F	D	T	W	G	N	Q	I	Q	T	L	C	L	L	P	L	M	S	G	D	T	M	L	G	V	L	K	L	A	Q	C	E	E	K	V	F	T	T	T	N	L	N	L	L	R	Q	I	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	P	I	L	R	I	H	L	G	Q	G	P	V	M	W	E	E	R	F	N	R	A	K	G	A	E	E	K	R	F	I	A	E	A	T	Q	N	G	M	G	S	G	I	T	F	S	A	A	S	E	R	N	N	I	G	S	I	L	S	I	A	G	R	E	P	G	R	N	A	A	L	V	A	M	L	N	C	L	T	P
Template Known Secondary structure			G	G	G	G	S		T	T	S											T			S													T	T		S	S									T	T	T	T									S	S	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		339	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	A	I	A	V	D	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	L	H	Q	A	A	I	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions